Rhodopseudomonas boonkerdii: E0H22_23035
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Entry
E0H22_23035 CDS
T07799
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rbk
Rhodopseudomonas boonkerdii
Pathway
rbk03030
DNA replication
rbk03410
Base excision repair
rbk03420
Nucleotide excision repair
rbk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E0H22_23035 (polA)
03410 Base excision repair
E0H22_23035 (polA)
03420 Nucleotide excision repair
E0H22_23035 (polA)
03440 Homologous recombination
E0H22_23035 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbk03032
]
E0H22_23035 (polA)
03400 DNA repair and recombination proteins [BR:
rbk03400
]
E0H22_23035 (polA)
Enzymes [BR:
rbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E0H22_23035 (polA)
DNA replication proteins [BR:
rbk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E0H22_23035 (polA)
DNA repair and recombination proteins [BR:
rbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
E0H22_23035 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E0H22_23035 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UGV28297
LinkDB
All DBs
Position
5060864..5063881
Genome browser
AA seq
1005 aa
AA seq
DB search
MSKAPAKSASPAPVKAPSKGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNM
LWKLMRDMPPADKPTHLAIIFDKSEITFRNKLYPDYKAHRPPAPDDLIPQFALIRDAVRA
FDLPCIEQAGFEADDLIATYVRQACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRLG
VPEVIEKFGVPPEKVVEVQALAGDSVDNVPGVPGIGIKTAAQLITEYGDLETLLARAPEI
KQPKRREALIENAEKARISRQLVLLDDKVTLDVPLDDLAVHEPDARKLIAFLKRMEFTTL
TRRVAEYSHIDIADVPAEAESGSAKPATKGSGEAGSQGGDLFGDIEQAPAVKRKTNGNGA
HATAPGSKDVLTPAALAKARAEAARNTPVKRDRYGTIRTRTDLDKWIARILDIGHVAFEA
KASSDDPMQADIVGLALALGPNDATYIPFAHRQSGDGAGLFAADLEPDQLKAADALDALK
PLLETAGLLKVGFNIKFTAVLLAQHGITLRNHDDVQLMSYALDAGRNAHGLEALAEAWLG
HAVLTYGEIIGSGKGKLTFEQVKIDRATEYAAEDADVLLRLWNVLKPRLAAERMNTVYET
LERPLISVLARMERRGISIDRQVLSKLSADFAQTAARIESEIKEIAGEDINIGSPKQLGD
ILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNY
VHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVASPGHKLVSADYS
QIELRLLAEIADIPVLKQAFQDGLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYG
ISAFGLANQLGIPREEASAYIKKYFERFPGIRAYMDQTRDFCREHGYVTTLFGRKCHYPD
IKASNPSLRAFNERAAINARLQGTAADIIRRAMSRMEDALAEKKLSAKMLLQVHDELIFE
VPDDEVAATLPVVQHTMQDAPFPAVLLSVPLNVDARAADNWEEAH
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagcccccgcaaaatctgcctcccccgcccccgtgaaagcgcctagcaaaggt
gaccacgtctttctggtggacggctcgtcctacatcttccgcgcctatcacgcgctgccg
ccgctgaatcgcaaatccgacgggttgcaggtcaacgccgtgctcggcttctgcaacatg
ctgtggaaactcatgcgcgacatgcccccggcggacaagccgacgcatctggcgattatc
ttcgacaaatccgagattaccttccgcaacaagctctatcccgactacaaggcccaccgc
cccccggcgcccgacgacctgatcccgcagtttgccctgatccgtgacgcagtgcgcgcc
ttcgatctgccatgtatcgaacaggctggcttcgaggccgatgacctgatcgcaacctat
gtgcggcaggcctgcgagcgcggcgccaccgccaccatcgtctcctccgacaaggatctg
atgcagctcgtgactgattgcgtcaccatgtacgataccatgaaggatcgtcgccttggc
gtgcccgaggtaatcgagaaattcggtgtgcctccggagaaggtggtcgaggtgcaggcg
ctggccggcgacagcgttgacaacgtgccgggcgtgccgggcatcggcatcaagaccgca
gcacagctcatcaccgaatatggcgatctcgaaaccctgctcgcccgcgctcccgaaatc
aaacaaccgaagcgtcgcgaggcgctgatcgagaatgccgagaaggcacgcatctcgcgc
cagctcgtgctgctcgatgacaaggtgacgctggatgtgccgcttgacgaccttgcagtg
catgagccggatgcgaggaagctcatcgcttttctaaagcgaatggaattcaccaccctc
acccgccgcgtggctgaatattcgcatatcgatattgccgacgtacccgccgaagcggaa
agcggctccgcgaagccggccacgaaaggcagcggcgaagctggcagccagggcggcgac
ctgtttggcgacatcgagcaggcgcccgcggtgaagaggaagaccaacggcaacggcgcc
catgcgacagcccccggcagtaaggatgtgctcacaccggccgcattggcgaaggcccgc
gccgaagccgcgcgcaatacaccggtaaaacgcgatagatatggcacgatccgcactcgc
accgacctcgacaagtggatcgcgcgcattctcgacatcggccatgtggccttcgaggcc
aaagccagctcggacgaccccatgcaggctgacatcgtcggccttgcgctggcgctcggg
ccgaatgacgcgacctatattccgttcgcccatcgtcaatccggcgacggtgccggcctg
ttcgccgccgatctcgagcccgatcagctcaaggccgccgatgcgttggacgcgctgaaa
ccgctcttggaaacagccggcctcctcaaggtcggcttcaacatcaagttcaccgcggtg
ctcctggcacagcatggcatcacgctgcgcaaccatgacgacgtgcagctgatgtcctat
gcactcgatgccggtcgcaatgcacacggactggaggcactggcagaggcatggctcggc
catgccgtgttgacctatggcgagattatcggctccggcaagggcaagctcactttcgag
caagtgaagatcgaccgcgccaccgaatacgccgccgaggacgccgacgtactgttgcgg
ctatggaatgtgctgaagccgcgcctcgctgccgagcggatgaatacggtctatgagacc
ctcgagcgaccgctgatctccgtgctggcacggatggagcgtcgcggcatctcgatcgac
cggcaggtgctatcaaagctctcggcggattttgcgcagacggccgcccgcatcgaatcc
gaaatcaaggagatcgccggcgaggacatcaatatcggcagcccgaaacagctcggcgac
atcctgttcggcaagatgggcctgcccggcggcagcaagaccaagaccggcgcgtggtcc
acctcggcgcaggtgctcgatgaacttgcggaacagggccacgaatttccgcgcaagatt
ctcgactggcggcaggtgtcgaaactgcgttcgacctataccgacgcattgccgaactat
gtgcatccacaaacccatcgcgttcatacgacctacgcgctggccgcgaccaccaccgga
cggctgtcctccaacgagccgaacctgcagaacatcccggtgcgcaccgaggatggccgc
aagatccgccgcgctttcgtcgcctcccccggccacaagctggtgtccgccgactattcg
cagatcgagctgcgcctgctcgccgagatcgccgatattcccgtgctgaaacaagccttc
caggacgggctcgacattcacgccatgacggcgtcggaaatgttcggcgtgccggtgaaa
gacatgccggctgaagtgcgccgccgcgccaaggcaatcaatttcggcattatctacggc
atctcggccttcggcctcgccaaccagctcggcatcccgcgcgaggaagcctcggcctat
atcaaaaaatacttcgaacgcttccccggcatccgcgcttacatggaccagacccgcgac
ttctgccgggaacatggctatgtgaccacgctgttcggccgcaagtgtcattaccccgac
atcaaggcctcgaacccgtcgctgcgcgctttcaacgaacgcgccgccatcaatgcacgc
ctacagggcaccgccgccgacatcatccgccgtgccatgagccggatggaggatgcgctg
gccgagaagaagctctcagcgaagatgctgctgcaggtgcatgacgaactgatttttgag
gtacccgacgacgaggtggccgcgacgctgccggtggtccagcacaccatgcaggatgcg
cccttcccggcggtgctgctatcggtgccgctgaatgtcgatgcgcgggcggcggacaat
tgggaagaggcgcattga
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