Rhizobiales bacterium NRL2: TEF_06740
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Entry
TEF_06740 CDS
T04419
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rbm
Rhizobiales bacterium NRL2
Pathway
rbm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TEF_06740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbm03400
]
TEF_06740
Enzymes [BR:
rbm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TEF_06740
DNA repair and recombination proteins [BR:
rbm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TEF_06740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ANK80528
LinkDB
All DBs
Position
complement(1460305..1462863)
Genome browser
AA seq
852 aa
AA seq
DB search
MASTRNLKTYQSKRDFRESPEPRGSVSKTDGRLYVIQSHDASRHHYDFRLELDGVLLSWA
IPKGPSLDPSDKRLAVRTEDHPVDYGGFEGVIPKGYGAGTVMLWDRGEWEAKDDPREALE
KGELKFTLKGARLKGGWALVRMKGGKDGDKENWLLVKEKDDHADPETEPGERWTTSAKSR
RKMKTIADEGQDLKKGKRYSPGGRAATKPKNSSSGQGGGSSRAKGKGKNAGTENGAMALE
FIEPQLATLVDDPPEGEEWLHEIKYDGYRIQAQIKDGEVRLISRNGKDWTDRYPDVAGAL
KKLKIDDAVMDGELVALDDRGHSNFSRLQQSQRQGDVSLRYYVFDLLHLNAKDLRKSPLT
DRKAKLADVVPAKGERVRYSDHIEGSGEAIIEKACDMGMEGIVSKKADAPYKSGRGRGWL
KSKCVGDDEFVIVGYRKSDKKGRPFSSLLLGAWDGDELVYRGRVGTGYDARDFDELGGKL
DRLSRKTCPLADPPSEARRGAVWVTPKLVAQVAYTEMTGDGLLRHPSYKGLREDKAAREV
RTGSRQSGDRENEMELENVRITSPDKVLFPEQGATKRRVAEYLHGNAERILTWLADRPLT
FVRCPDGRDDECFFQQHHTASTPDEIGWVEIEESGGKTARHLVISDARGLVAAAQIAALE
FHLWGARKDRIDRPERIVFDLDPDEGLDFRDVRAAARELKDILEGAGLTSYPMLTGGKGI
HVIVPIQRRRGWDDVKAFAAGLARRMAEADPDRYVAQASKAKRKGRIFIDWLRNERGATA
IAPYSPRARAGAPVATPVGWDELGRIDRANRYTLDNIDARLKRLKSDPWEGYGEARQSVT
DEHLRFVEDASG
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcacccgcaatctgaaaacctaccagtcgaagcgggacttccgcgagagccct
gaaccccgggggtcggtcagcaagaccgacgggcgcctctatgtcatccagtcccacgac
gccagccgtcaccactacgatttccgcctggaactggatggcgtgctgctgagctgggcc
atcccgaaggggccgagtctcgacccgtccgacaagcgcctcgccgtccgcaccgaggac
catccggtcgactatggcggcttcgaaggcgtgatcccgaagggctacggcgccggcacc
gtcatgctgtgggatcgcggcgaatgggaggcgaaggacgatccccgcgaagccctcgag
aagggcgagctgaaattcaccctgaagggcgcccggctgaagggcggttgggcgctggtc
cgcatgaaggggggaaaggacggcgacaaggagaactggctgctggtcaaggagaaggac
gaccacgcagacccggagaccgagcccggcgagcgctggaccaccagcgcgaagtcgcgg
cggaagatgaagaccatcgccgacgaaggccaggatctgaagaaggggaaacgctacagc
cccggcggccgggccgcgacgaagccgaagaattcctcttcgggacagggcggcggttcg
tcccgcgcgaagggcaaggggaagaacgccggaacggagaatggcgctatggccctggaa
ttcatcgaacctcagctggcgaccctggtcgacgacccgcctgaaggcgaggaatggctg
cacgagatcaagtatgacggctatcgcattcaggcgcagatcaaggatggcgaggtgcgc
ctgatcagccgcaacggcaaggactggacggatcgctatccggatgtggccggggcgctg
aagaaactgaaaatcgacgacgcggtcatggacggtgagttggtcgcgctggacgaccgc
ggccacagcaacttctcccggcttcagcagagccagcgccagggcgatgtttcgcttcgc
tactacgtcttcgacctgctgcatctgaacgcaaaggaccttcgcaagtcgcccctgacg
gaccgaaaggcgaaactggccgacgtcgtccccgcgaagggcgagcgcgtgcgctacagc
gaccacatcgaagggtccggcgaggcgatcatcgagaaggcctgcgacatgggcatggaa
ggcatcgtgtcgaagaaggccgatgcgccctacaagtcgggccgcgggcgcggctggctg
aagtcgaaatgcgtcggcgacgacgagttcgtcatcgtcggctaccgcaagtccgacaag
aagggccggcccttctcctccctgctgctgggcgcctgggacggcgacgagctggtctat
cgcgggcgcgtcggcaccggctacgacgcgcgggacttcgacgaactgggcggcaagctc
gaccggctgtcgcgcaagacctgtcccctcgccgatccaccctcggaagcccggcgcggc
gcggtctgggtcacgccgaagctggtcgcccaggtcgcctataccgagatgaccggcgac
gggctgttgcgccatcccagctacaagggcctgcgcgaggacaaggcggcgcgcgaggtg
cgcaccggttcacggcagtccggcgaccgggagaacgagatggaactggaaaacgtccgc
atcaccagtccggacaaggtgctgttccccgagcagggagcaaccaagcgccgggtggcc
gaatacctgcacggcaatgccgaacggatactgacctggctcgcggaccgtccgctgacc
ttcgtgcgctgtccggacggacgcgacgatgagtgcttcttccagcagcaccataccgcc
tcgaccccggacgagatcggatgggtggagatcgaggaaagcggcggcaagaccgcacgg
cacctggtcatttccgacgccagggggctggtcgcggcggcgcagatcgccgccctggag
tttcatctctggggcgcgcgcaaggaccggatcgaccggccggagcggatcgtcttcgat
ctcgacccggacgagggactggatttccgggacgtgcgcgcggccgcccgggagctgaag
gacatcctcgaaggcgcggggctgacatcatatcccatgctcaccggcggcaagggcatc
cacgtcatcgtacccatccagcgccggcgcggctgggacgacgtgaaggccttcgccgcc
ggcctggcgcgccggatggccgaggccgatcccgaccgctacgtggcccaggcctccaag
gcgaagcgcaagggccggatcttcatcgactggctgcgcaacgagcgtggcgccacggcc
atcgccccctattcgccccgcgcccgcgcgggcgcgcccgtggcgacgccggtcggctgg
gacgaactcggccgcatcgaccgggcgaaccgctacacgctggacaatatcgacgcgcgg
ctgaaacggctgaagtcggatccctgggaaggctatggcgaggcccgtcaatcggtgacc
gacgagcatctgcgtttcgtcgaagacgcgtccggatag
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