Rubrivivax benzoatilyticus: RBXJA2T_05538
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Entry
RBXJA2T_05538 CDS
T04092
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rbn
Rubrivivax benzoatilyticus
Pathway
rbn03030
DNA replication
rbn03430
Mismatch repair
rbn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBXJA2T_05538
03430 Mismatch repair
RBXJA2T_05538
03440 Homologous recombination
RBXJA2T_05538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbn03032
]
RBXJA2T_05538
03400 DNA repair and recombination proteins [BR:
rbn03400
]
RBXJA2T_05538
Enzymes [BR:
rbn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBXJA2T_05538
DNA replication proteins [BR:
rbn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBXJA2T_05538
DNA repair and recombination proteins [BR:
rbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBXJA2T_05538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
EGJ09769
LinkDB
All DBs
AA seq
1169 aa
AA seq
DB search
MPFVHLRTHTEYSVVDGTLRIDDAAGAAKADGQPALAITDLSNLFGAIKFYKACRGAGVK
PIVGVDVWMDPLPDAAERQPTRLALLVQDRGGYLNLCELLARAWTKNVQRNQAWVKWEWL
HELSGGLIALSGADMGAVGQALLAGDEQRAAAAARELASIFPGRFYLELQRAGLPTHEAH
VRAAVPLAARLGLPVVATHPIQFLEPDDFEAHEARVCIAEGETLANPKRIKRFTREQHFK
TAAQMESLFADVPSAIANTVEIARRCSLTLVLGKPRLPDFPTPDGSPIDVYFRKASHEGL
EKRLVALFPKEEEREKRRPEYVERLEFELDTILKMGFPGYFLIVSDFIVWAKANGCPVGP
GRGSGAGSLVAYALFITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQGNRDRVIRYVKE
KYGRDAVGQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLIPAPPGKTVTLAKVPEKP
DPGIIYARQEEPEIDRREAAEEEVAELLSLATRVEGMVRNIGMHAGGVLIAPGKITDFCP
LYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELARQFIVARRPNMKDFSYETL
PLDDQRVYKLFSDGLTEAVFQFESRGMQGMLREAKPSRLEDLIALNALYRPGPMDLIPTF
VARKHGKETVEYPHPLLETVLGETYGVMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK
PEEMAQHRVIFREGAAKKDIPEAKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTAWIKV
HCTAEFFAANMTIEADNTDKLKVLLADAKLFGIRFDPPDVNTGTLRFEPIEDKRIRYGLG
AVKGTGAGAIEAIVAAREGRAGDGGGPFRSLFDFCARVDRQRVNKRVVEALIKAGAFDSL
HADRAATLASVGLAFEWADTQAANKDQGGLFDFGDAHGSSTQEPALVAVEPWSVRERLMQ
EKIAIGFYLSGHLFDACRDEVRKFVRRDIVELVDSREPQSVAGIVSELRVINGQRGRVAI
FKLDDGSEAIEAVANEELLDASRELLREDELVIVVGKLQPDRFSGGLRLNAQQVWDLATA
RARYGRYLSVELNGGLPPVADVLKLWPARRVETEEGETQQGLAVRLKLKRATAVGELDLG
SDARFWPCDEALARWKTIADQGRAAIVYE
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcgttcacctgcggacgcacaccgaatattccgtcgtcgacggcacgctgcgc
atcgacgacgcggccggcgccgccaaggccgacggccagccggcgctggccatcaccgac
ctgtccaacctcttcggcgcgatcaagttctacaaggcctgccgcggcgcgggcgtcaaa
cccatcgtcggcgtcgacgtctggatggacccgctgcccgacgccgccgaacgccagccc
acgcgcctggcgctgctggtgcaggaccgcggcggctacctgaacctgtgcgagctgctg
gcgcgcgcctggacgaagaacgtgcagcgcaaccaggcctgggtgaagtgggagtggctg
cacgagctgtcgggcgggctgatcgcgctgtccggcgccgacatgggcgcggtcggccag
gcgctgctggccggtgacgagcagcgcgccgccgcggccgcgcgcgagctggcctcgatc
ttcccgggccgcttctacctcgaactgcagcgtgccggcctgccgacccacgaggcccat
gtgcgtgccgcggtgccgctggccgcccggctggggctgcccgtcgtggccacgcacccg
atccagtttctcgagcccgacgacttcgaggcccacgaggcgcgggtctgcatcgccgaa
ggcgagacgctggccaaccccaagcgcatcaagcgattcacgcgcgagcagcacttcaag
accgcggcgcagatggagtcgctgttcgccgacgtgcccagcgcgatcgccaacaccgtc
gagatcgcgcgccgctgcagcctgacgctggtgctgggcaaacctcgcctgcccgacttc
ccgacgcccgacggctcgccgatcgacgtgtacttccgcaaggcctcgcacgagggcctg
gagaagcgcctggtggcgctgttcccgaaggaggaggagcgcgaaaagcgccgccccgag
tacgtcgagcgcctggagttcgagctcgacaccatcctgaagatgggtttcccgggctac
ttcctgatcgtctcggacttcatcgtctgggccaaggccaacggctgcccggtcggcccg
gggcggggttcgggcgccggctcgctggtcgcctacgcgctgttcatcaccgacctcgac
ccgctgcagtacaagctgctgttcgaacgcttcctgaacccggaacgcgtgtcgatgccc
gacttcgacatcgacttctgccagggcaaccgcgaccgcgtgatccggtacgtgaaggag
aagtacggccgcgacgcggtcggccagatcgcgaccttcggcacgatggccgccaaggcg
gcgctgcgcgacgtcggccgcgtgctcggcatgggctacggccacgtcgacagcatcgcc
aagctgatcccggcgccgccgggcaagacggtgacgctggccaaggtgcccgagaagccc
gacccgggcatcatctacgcgcgccaggaagagcccgagatcgaccgccgcgaggccgcc
gaagaagaagtggccgagctgctgtcgctggccacgcgtgtcgagggcatggtgcgcaac
atcggcatgcacgccggcggcgtgctgatcgcgccgggcaagatcaccgacttctgtccg
ctgtaccagcagcccggcagcgacagcgcggtcagccagtacgacaaggacgacgtcgag
gccatcggcctggtgaagttcgacttcctgggcctggcgacgctgacgatcctggagctg
gcgcgccagttcatcgtcgcgcggcggccgaacatgaaggacttcagctacgagacgctg
ccgctggacgaccagcgggtctacaagctgttctccgacggcctgaccgaggcggtgttc
cagttcgaatcacgcggcatgcagggcatgctgcgcgaggccaagcccagccggctggag
gacctgatcgcgctgaacgcgctgtaccgcccgggcccgatggacctgatcccgaccttc
gtcgcgcgcaagcacggcaaggagacggtggagtacccgcacccgctcttggagaccgtg
ctcggcgagacctacggcgtcatggtctaccaggagcaggtgatgcagacggcgcaggtg
ctgggcggctactcgctcggcggcgccgacctgctgcgccgtgcgatgggcaagaagaag
cccgaggagatggcccagcaccgcgtcatcttccgcgagggcgcggccaagaaggacatc
cccgaagcgaaggccgacgaggtcttcgacttgatggagaagttcgccggctacggcttc
aacaagtcgcacgcggccgcgtactcgctgctggcctatcacacggcctggatcaaggtg
cactgcacggccgagttcttcgcggccaacatgacgatcgaagccgacaacaccgacaag
ctgaaggtgctgctggccgacgccaagctgttcggcatccgcttcgatccgcccgacgtc
aacaccggcacgctgcgtttcgagccgatcgaggacaagcgcatccgctacggcctgggc
gccgtcaagggcaccggcgccggcgcgatcgaggccatcgtcgcggcgcgcgaaggccgc
gccggcgacggcggcggcccgttccgcagcctgttcgacttctgcgcccgggtcgaccgc
cagcgtgtcaacaagcgtgtcgtcgaagcgctgatcaaggccggcgccttcgactcgctg
cacgccgaccgcgccgcgacgctggccagcgtcggcctggcgttcgagtgggccgacacg
caggccgccaacaaggaccagggcgggctgttcgacttcggcgacgcgcacggatcgagc
acgcaggaaccggcgctggtcgcggtggaaccgtggtcggtgcgcgagcggctgatgcag
gagaagatcgccatcggcttctacctgtcgggccatctgttcgatgcctgccgcgacgag
gtgcgcaagttcgtgcgccgcgacatcgtcgagctggtcgactcgcgcgagccgcagtcg
gtggccggcatcgtctccgagctgcgcgtcatcaacggccagcgcgggcgtgtcgcgatc
ttcaagctcgacgacggcagcgaggccatcgaggccgtggccaacgaggagctgctggac
gccagccgcgagctgctgcgcgaggacgagctggtcatcgtcgtcggcaagctgcagccc
gaccgtttctcgggcggcctgcgcctgaacgcgcagcaggtctgggacctggcgacggcg
cgcgcccgttacggccgctacctgtcggtcgaactcaacggcggcctgccgccggtggcc
gacgtgctgaagctctggccggcgcgccgtgtcgagaccgaggaaggcgagacccagcag
ggcctggcggtgcggctgaagctcaagcgtgcgacggccgtcggcgagctcgacctcggc
agcgacgcccgcttctggccctgcgacgaggcgctggcgcgctggaagacgatcgccgac
cagggacgcgcggccatcgtctacgaatga
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