Rubrivivax benzoatilyticus: RBXJA2T_12657
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Entry
RBXJA2T_12657 CDS
T04092
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rbn
Rubrivivax benzoatilyticus
Pathway
rbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBXJA2T_12657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbn03019
]
RBXJA2T_12657
03016 Transfer RNA biogenesis [BR:
rbn03016
]
RBXJA2T_12657
Enzymes [BR:
rbn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RBXJA2T_12657
Messenger RNA biogenesis [BR:
rbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RBXJA2T_12657
Transfer RNA biogenesis [BR:
rbn03016
]
Prokaryotic type
tRNA degradation factors
RBXJA2T_12657
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
DUF5813
DNA_pol3_a_NI
S1_2
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
EGJ11178
LinkDB
All DBs
AA seq
769 aa
AA seq
DB search
MSMFNKVTKSFQWGSHQVTMETGEIARQSTGAVVVSVDDTVVLATVVAKSDAKAGQDFFP
LTVDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFYNEVQVVIHVL
SLNPEVQADIPAMIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPSAAQLADSQMDLV
VAGTEAAVLMVESEATGLSEEVMLGAVVFGHDQGKIAIAAINELVREAGKPAWDWQPPAK
DEAFIAKVTALAEEPLRAAYQIRSKQARTQATRAVGASVQAALKEEGVAFDPVAVDNLLF
EIEARIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGT
ERDAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPNK
DEFPYTMRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRFAVL
TDILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMV
EAVGGAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTDETGCTIDIGEDGTITIA
STDADKAAFAQKRIEEITAEAEIGKVYEGPITKILDFGALVNILPGKDGLLHISQIAHQR
VEKVTDFLEEGQVIKVKVLETDEKGRIKLSMKALLDKPEGYVEEERPRRERSERGDRGDR
GDRGPRREREPREPREPREPRAEAAPAADAPAAEAPAPEQGAERAPGQE
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgttcaacaaggtcacgaagagcttccaatggggctcgcaccaggtcacgatg
gaaacgggcgagatcgcccgccagtccaccggcgccgtcgtcgtcagcgtcgacgacacc
gtcgtgctggccaccgtggtcgccaagtccgacgccaaggccggccaggacttcttcccg
ctgaccgtcgactacatcgagaagacctacgccgccggcaagatccccggcagcttcttc
aagcgtgaaggccgtccgagcgagctcgagacgctgacctcgcgcctgatcgaccgcccg
atccgtccgctgttccccgaaggcttctacaacgaggtccaggtcgtcatccacgtgctg
agcctgaaccccgaggtccaggccgacatcccggcgatgatcgcgaccagcgccgcgctg
tcgatcagcggcatcccgttcaatggcccgatcggcgccgcgcgcgtcggctacgtcaac
ggcgagtacgtgctcaacccgagcgccgcccagctggccgacagccagatggacctcgtc
gtcgccggcaccgaagccgccgtgctgatggtcgagtccgaggccaccggcctgtccgag
gaagtgatgctcggcgccgtcgtcttcggccacgaccagggcaagatcgcgatcgccgcg
atcaacgagctggtgcgtgaagccggcaagccggcctgggactggcagccgccggccaag
gacgaggccttcatcgccaaggtcaccgcgttggccgaggagccgctgcgcgccgcctac
cagatccgcagcaagcaggcccgcacccaggccacgcgtgccgtcggcgccagcgtgcag
gccgcgctgaaggaagagggcgtcgccttcgacccggtcgccgtcgacaacctgctgttc
gagatcgaggcgcgcatcgtgcgcggccagatcctggccggcgagccgcgcatcgacggc
cgcgacacgcgtaccgtgcgcccgatcgagatccgctccagcgtgctgccgcgcacccac
ggctcggcgctgttcacgcgcggcgagacgcaggccctggtcgccgcgacgctgggcacc
gaacgcgacgcgcagcgcatcgacgcgctggccggcgagttcgaggaccgcttcatgctg
cactacaacatgcccccgttcgccaccggcgagacgggccgcgtgggcagccccaagcgc
cgcgagatcggccacggccgcctggccaagcgggcgctggtcgccgtgctgccgaacaag
gacgagttcccgtacacgatgcgcgtggtctcggagatcaccgagtccaacggttcgtcg
tcgatggcctcggtctgcggcggctgcctgtcgctgctggacgccggcgtgccgctgaag
gcgcacgtcgccggcatcgcgatgggcctgatcaaggaaggcaaccgctttgccgtgctg
accgacatcctcggtgacgaggatcacctcggcgacatggacttcaaggtggccggcacc
gccagcggcatcacggcgctgcagatggacatcaagatccagggcatcaccaaggagatc
atgcaggtcgccctggcgcaggccaaggaagcgcgtctgcacatcctgggcaagatggtc
gaggccgtcggcggcgccaaggccgaggtgagccagttcgccccgcgcctgtacacgatg
aagatcaacccggagaagatccgcgacgtcatcggcaagggtggcgcgacgatccgggcg
ctgaccgacgagaccggctgcacgatcgacatcggcgaagacggcacgatcacgatcgcc
agcaccgacgccgacaaggccgccttcgcgcagaagcgcatcgaggagatcacggccgag
gccgagatcggcaaggtctacgaaggcccgatcaccaagatcctggacttcggcgccctg
gtcaacatcctgccgggcaaggacggcctgctgcacatcagccagatcgcccaccagcgt
gtcgagaaggtcaccgacttcctcgaagaaggccaggtcatcaaggtcaaggtgctcgag
accgacgagaagggccgcatcaagctcagcatgaaggcgctgctcgacaagccggaaggc
tacgtcgaggaagagcgtccgcgccgcgagcgcagcgagcggggtgaccgtggcgatcgc
ggcgatcgtggtccgcgccgcgagcgtgaaccccgcgagccgcgtgaaccgcgcgagccg
cgggccgaggcggctccggccgccgacgcgccggccgccgaggcgccggctccggagcag
ggcgccgagcgcgcgcccggccaggagtaa
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integrated database retrieval system
