KEGG   Riemerella columbina: NYR17_04950
Entry
NYR17_04950       CDS       T09247                                 
Symbol
hsdR
Name
(GenBank) type I restriction-modification system endonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
rcl  Riemerella columbina
Brite
KEGG Orthology (KO) [BR:rcl00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rcl02048]
    NYR17_04950 (hsdR)
Enzymes [BR:rcl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     NYR17_04950 (hsdR)
Prokaryotic defense system [BR:rcl02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   NYR17_04950 (hsdR)
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 Helicase_C DEAD DUF4145 HSDR_N AAA_19 T2SSE AAA_22 UvrD-helicase Flavi_DEAD
Other DBs
NCBI-ProteinID: WKS94301
LinkDB
Position
1025851..1029120
AA seq 1089 aa
MASNFIFLEKDYALLYQIANLSEKYLYSDPNTCMFKLRQFSEMMVNEIYQIEHIPLPMES
HQANKINTLRREGMIEPIIADMLHQLRLKGNDAVHSVYASAETAETLLRMAYKLARWFAL
SYGEGTQGHSAFVLPEKNTLSIDVLKQEKEAQEQEIKALQKAVLQLQKQKDYIEESQSKA
FISKQKERVSQSRRYAGELTLSEAETRKIIDSQLQEAGWEADSELLKYSKGTRPQKGRNL
AIAEFPTEKGRADYALFAGLKLVGIVEAKSESKDVSGIIVNQCKDYATSIKPEHSDYVIQ
NWGAYQVPFVFATNGRKYLKQLETKSGIWFLDTRQSDNIPKALQHWKSPQGLLEDLEKDI
EKANRELSETSYDLLRDKDGLNLREYQIKAVEAVEQSLFKGKQSILVSMATGTGKTRTIL
AMIYRFLKTKRFKRILFLVDRNSLGTQAHDVFKEVKIEELQTLNNIYNIKKLEDKTIDRE
TKIHMSTVQAMVKRLLYNEDGNPPLVSDYDLVIIDEAHRGYTLDREVDDDELEFRNQEDF
ISKYRMVIEYFDAVKIAVTATPALHTSEIFGKAVFEYSYREAVLDGYLVDYNIPKQIRTE
LSEEGIHYKKGETIQVFDAEKNEIIDFSELEDELDFDIDQFNKKVIVESFNRVVLEDIAQ
HIDPEGDGKTLIFAVDDNHADLIVKILKEIYAEQGVDHEAIKKITGSIGDKNRVAQAIKE
FKNEKYPNIVVTVDLLTTGIDVETITTLVFLRRVKSRILFMQMLGRATRLCPRIGKESFD
IYDPVGVFESIIDVTDMKPVVVNPTMSLEDLQTGIQRAKDEDTLKKYVNQLVGRLQRRAK
NIIDEDKEYFLNITQGVDVQEFIKELKSLPAEHIKTFVQEHSEPIQHLFHSSPKRRISHY
KVISDKPDRVSERFEGYGKMAERPADYIEEFKTFITENQNKIAALTVLCTRPKDLTRTEL
KKLHMELDNAGYRINEVNKAWNQVKNVEIITDIIGLVRTMALGSTLVDYSTRLENAFAKL
KENHQFSKIEERWLDLIEKHLRKEQFIDRESFEVGAFKNKGGFEKINKAFKNQLNSIIDE
LKTYLFETA
NT seq 3270 nt   +upstreamnt  +downstreamnt
atggcttctaattttatctttttggaaaaagactatgctcttctttatcaaatagcaaat
ttatcggagaaatatttgtattcagatccgaatacttgtatgttcaaattgcgacagttc
agtgagatgatggtcaatgagatttaccaaatagaacatattccgttgcctatggagtcg
caccaagccaataaaatcaatacgctgagaagggaagggatgatagagcccatcattgct
gatatgttgcatcagttacgcctcaaagggaatgatgctgtgcattcggtgtatgcttcg
gcggaaacggcagaaacactgctccgaatggcttataagttggcacgctggtttgcactg
tcgtatggagagggcacgcaggggcattcggcatttgtgttgcctgagaaaaataccctt
tctatcgatgtgctgaagcaggaaaaggaagcccaagagcaggaaattaaagccttgcaa
aaagccgtacttcagcttcaaaaacagaaagattatatagaggaaagtcagtctaaagca
tttatttccaagcagaaagaacgcgtgagccaatctcggcgctatgctggggaactaacc
ctctccgaagccgaaacccgaaaaattattgatagtcagttgcaggaagcaggttgggaa
gccgactccgaacttttgaaatattccaaaggcactcgcccacagaaaggaagaaattta
gccattgcagagtttcctaccgagaagggaagagccgattatgccctttttgcagggtta
aaattggtgggcattgtggaagccaaatccgagagcaaagatgtttctggcattatcgta
aatcagtgtaaagactatgcaaccagcataaaaccagagcattccgactatgtgatccaa
aattggggagcctatcaggtgccttttgtttttgctaccaatggacgaaaatacctcaaa
caattggaaaccaagtctggcatttggtttttggatacccgccagagcgataatattccg
aaggcgttgcagcattggaaaagtccgcaagggttgttagaagatttggaaaaagacatt
gaaaaagccaaccgagaactctcggaaacttcctatgatttgctgcgagataaggacgga
ttgaacctccgtgagtaccaaataaaagcggtggaagcggtggagcaaagcctttttaag
ggcaagcaatccattttggtatcaatggcaacgggaacagggaaaacccgcactatttta
gcgatgatttatcgttttttgaaaactaaacgcttcaaaagaattctctttttggttgat
cgaaattcactgggaacacaagcccacgatgtttttaaagaagtaaaaatagaagagctg
caaacgcttaataacatttacaatatcaagaagttagaagacaaaaccatcgatagagaa
accaaaatccatatgagcactgtgcaggcgatggtcaagcgtttgttgtataatgaggac
ggcaatcctccgctggtttcggattatgatttggtgattatagatgaagcacacagaggc
tatacccttgatagagaggtggatgacgatgagctggagtttcgcaatcaagaagatttc
atcagtaaataccgaatggtgatagagtattttgacgctgtaaaaatagccgtaacggca
acgcctgccctgcatacttccgaaatttttgggaaagccgtgtttgaatattcttacaga
gaggcggtgttagacggttatttggtggattataatatccctaaacaaatccggacggaa
ttgagcgaagagggcattcattataaaaaaggcgaaaccattcaggtttttgatgccgaa
aaaaatgaaattattgatttttctgagcttgaagatgaactggattttgatatagaccaa
tttaacaaaaaagtcatcgtagagagttttaatcgagtggtgcttgaggatattgcgcaa
catattgaccctgagggagatggtaaaacgctgatttttgcggttgatgataaccacgct
gatttgattgtaaaaatcctcaaagaaatttatgccgagcaaggcgtagaccacgaggcg
attaagaaaatcacgggtagcattggcgataaaaaccgagtggcacaagccatcaaggag
tttaaaaacgaaaaataccctaatattgtggtaaccgtagatttattaaccacaggaatt
gatgtagaaaccatcaccactttggtatttttacgacgggtaaaatcaaggattttgttt
atgcaaatgctggggagagccacgcgtttatgcccaagaataggcaaggaaagctttgat
atttatgaccctgtcggcgtttttgaaagcattattgatgtaacggatatgaaacctgtg
gtggtcaatcctaccatgagtttggaagatcttcaaacaggaatacagcgtgccaaagat
gaggatacgctcaaaaaatatgtcaatcagttggtaggaaggctgcaaaggcgtgccaaa
aatatcattgatgaagataaagaatattttctaaatatcacgcaaggagttgatgtacag
gagtttatcaaagaattgaaaagcttgccagcggagcatatcaaaacctttgtgcaagaa
catagcgagccgattcagcatctatttcattcctcacccaagcgtagaatttctcattat
aaagtgattagcgataagcccgaccgagtgtcagaacgctttgaaggctatggaaaaatg
gcagaacgcccagcggattatatcgaagaatttaaaacctttatcaccgaaaatcaaaat
aaaatagcggcactcaccgtgctttgcacgcgccccaaagacctgacccgcaccgaattg
aaaaaactacatatggaattggacaacgcagggtatcgcatcaatgaggtcaataaagcg
tggaatcaggttaaaaatgtggagattatcacggatattattggattggttcgcacgatg
gctttgggcagcactttggtggattatagcacacggctggaaaatgcatttgccaaactc
aaagaaaatcatcagtttagcaaaatagaagaacgctggttagacctgattgagaagcat
ttgagaaaagaacaatttatcgaccgtgagagttttgaggtaggcgcttttaaaaacaaa
ggaggttttgaaaaaatcaataaagcatttaaaaatcagttaaatagcattattgatgag
ttgaaaacttatctattcgaaaccgcataa

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