KEGG   Rosa chinensis (China rose): 112168234
Entry
112168234         CDS       T06020                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03030  DNA replication
rcn03410  Base excision repair
rcn03420  Nucleotide excision repair
rcn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112168234
   03410 Base excision repair
    112168234
   03420 Nucleotide excision repair
    112168234
   03430 Mismatch repair
    112168234
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rcn03032]
    112168234
   03400 DNA repair and recombination proteins [BR:rcn03400]
    112168234
Enzymes [BR:rcn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     112168234
    6.5.1.6  DNA ligase (ATP or NAD+)
     112168234
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     112168234
DNA replication proteins [BR:rcn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    112168234
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     112168234
DNA repair and recombination proteins [BR:rcn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     112168234
   NER (nucleotide excision repair)
    Other NER factors
     112168234
   MMR (mismatch excision repair)
    Other MMR factors
     112168234
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 112168234
NCBI-ProteinID: XP_024161125
LinkDB
Position
5:60767788..60775751
AA seq 796 aa
MLSLSHPLRSCSTCLRLHSALRSLRHSSLFPIPISPNPNRAMSSNRPSAFDALMSGARAA
AAKKKPQPSSSSSPKKRKTLNPSPSSNSAPKENPQLLSKPEDAAPSPAAESKPEMEEEGQ
DQSGNGAELAPTAKKVCAAAGVEERTAQLAGRIELLKKKALDFDPKLMANWDKGERVPFM
FLSLVFNLISKESGRIVITDIVCNMLRTVIYTTPEDLLPVVYLSANKIAPAHEGLELGIG
DSSIIKALSQACGRSEKDVKKRYDAEGDLGIVAQKSRSSQTMMRKPEPLTVSKVFNTFRT
LAKESGKDSQEKKKNHMKALLVAATDCEPLYLIRLLQSKLRIGLAEQTLLAALGQAAVYT
EEHSKPPPEIQSPLEEAAKIVKQVYSLLPVYDKIIPALLSGGVWNLPKTCSFTLGIPVGP
MLAKPSKGVSEIVQKFQDTEYTCEYKYDGERAQIHYMEDGIVEIYSRNAERNTGKFPDVA
IAVSRLKKSSVKSFVLDCELVAYDRANNKILPFQVLSTRARKNVSMSDIKIEVCIFAFDM
LFLNGRPLTQEQLKVRREYLYDSFEEEAGIFQFATAITSKDIDEIQTFLDAAVNSSSEGL
IIKTLSKDATYEPSKRSLNWLKLKKDYMDSFGDSLDLVPIAAFHGRGKRTGVYGAFLLAC
YDSNNEEFQSICKIGTGFSEAVLEERSASLRETVIPKPKTYYSYAETSNANTPDVWFEPT
QVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRLVRVREDKKPEEASSSEQVADMYSA
QSNKSSNHQDDKEDED
NT seq 2391 nt   +upstreamnt  +downstreamnt
atgctctcactctcacacccactgcgttcttgctctacttgtcttcgcctacactctgct
ctccgctctctccgtcactcctctctcttccccattccgatttcgccaaaccctaatcgc
gccatgtcctccaatcgcccctccgccttcgacgctctcatgtccggcgcacgcgccgcc
gccgccaagaaaaagccccaaccctcttcctcttcctcccccaagaagcgcaaaacccta
aaccccagccctagctccaattccgcgcccaaggaaaatccccaattgctatccaaacca
gaagacgctgctccgagcccggccgcggaatccaaaccagaaatggaggaagaaggtcaa
gaccagtctggcaatggcgccgagctggcaccgacggcgaagaaagtgtgcgcggcggcc
ggagtggaggagcggacggctcaattggcgggtagaattgagctgttgaagaagaaggcc
cttgattttgacccgaagctgatggcgaattgggacaagggcgaaagggttccgtttatg
tttctttctttggttttcaatttgatttccaaagagtctgggcggattgtgattacggat
atagtgtgtaatatgcttaggactgtaatctacaccacgccggaggatttgctcccggtg
gtttatctctcggccaataagattgctccggcacatgagggattggagcttggcattggg
gactcttcaattatcaaggcgctttcgcaggcttgtgggaggagtgaaaaggacgttaag
aagcgctatgatgcagaaggggacttgggtattgttgcacagaaaagccgttcatcccaa
acgatgatgcgcaagcctgagccattgactgtcagcaaggttttcaacacatttcgcacc
cttgctaaggaatctgggaaggatagccaggagaagaaaaagaaccatatgaaggcactt
cttgttgctgccactgactgtgaacctctgtatttgatccgtttgcttcagtcgaagttg
cgaattggattggcagagcagactcttttggctgcactgggacaagctgcagtctatact
gaagaacattctaaaccacctcctgaaattcagtctcctttagaagaggctgcaaagatt
gttaaacaagtgtactctctgcttcctgtttacgataagatcatccctgcccttctgagt
ggtggtgtttggaatcttccaaaaacgtgtagctttactttgggtatcccagttggacct
atgcttgcaaagccaagtaaaggggtatctgagattgtccaaaagtttcaagatacagaa
tacacctgtgaatacaagtatgatggagagcgtgcccagatacattacatggaggatggt
attgttgagatatacagtcgaaatgctgaacgaaacaccggaaagttccctgatgttgcg
attgcagtgtcaaggttaaagaagtcgtctgtaaaatcatttgttttagattgtgaattg
gttgcctatgaccgtgcaaataacaaaattctgcccttccaggtacttagcacccgagcc
cgtaaaaatgtgagcatgagcgatattaagattgaggtctgcatatttgcttttgatatg
ttgtttcttaatggtcgaccacttactcaagaacagctcaaagttcgcagagagtatctt
tatgactcttttgaggaagaagctggaatttttcagtttgccacagcaataacctcaaag
gatattgatgaaatacaaacatttcttgatgccgccgttaattcaagttctgagggttta
ataatcaaaacattaagcaaagatgccacatacgagccttcgaagcggtcacttaactgg
ctgaaattgaagaaagattacatggatagtttcggggactcactggacttggtacctatt
gctgctttccatggccggggaaaacgtacaggtgtctatggtgcttttctccttgcttgc
tacgatagcaataatgaagagtttcaaagcatatgtaaaataggcactggattttctgaa
gcagtgcttgaagagcgttctgccagcctgcgtgaaacagtgatacctaaacctaagaca
tactatagctatgcagaaacaagtaatgcaaatactccagatgtatggtttgaacccact
caggtttgggaggtgaaagctgctgacttgactattagtcctgtgtatcgtgctgcagta
ggcatagtggattctaacaagggtatttctcttcgatttccacgtcttgttcgtgttagg
gaagataaaaaaccagaggaagcttcatcatctgagcaggttgctgatatgtattctgct
caatccaacaaaagttctaatcaccaagatgacaaggaagatgaagactag

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