Rosa chinensis (China rose): 112180403
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Entry
112180403 CDS
T06020
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03022
Basal transcription factors
rcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112180403
09124 Replication and repair
03420 Nucleotide excision repair
112180403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112180403
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112180403
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112180403
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112180403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
112180403
NCBI-ProteinID:
XP_024174719
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All DBs
Position
7:42145267..42155179
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AA seq
597 aa
AA seq
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MSTPQVIKRAKYKTSIKDPGTPGLLTMMENRFVFRPNDPTSPSKLDVGFHQIKGQKNTKE
GSNKPPWLNISNNKDGSYIFEFESYPDLHACREIIANALEAAKGSSAATISSTAKASSST
NEQYSTAELELRMKLMQEDSELQKLHKQFVGSGVLTESEFWATRKKLLDGDSRKKSKQRV
GFKSSMILDIKPMTDGRMNKVTFNLTDEIKYQIFALKPAVHQAYIDLVPSKMTEKDFWNK
YFRAEYLHSTKNVVAAAAEAAEDEELAIFLKEDEILAREARQKIQRVDPTLDMEADQGDD
YIHLPDHGIFRDGTKDITELQNDQYRRTLSQDLNRQGAVVLQGRNLDVDPEDPRTIAEAL
MRSRQEPSDSAVQERLDRLTRMTEIDDLRESHDHPVAPLCIKDPRDYFDTQQANALRTLD
DSRTGTEQTKRKLTTEEAYGALKESISKIKSIGLSNSTVKPEVALTVFNGLTQNISSTKY
QLGKNPRESILDGLPNRTKEELLHHWMSIQELLRHFWSSYPITTSSLYTKVGRLKDAMSQ
IYRQLEEIKEAVQSDFRHQVSLLVRPMHQALDAAFQHYEADLQKRAAKSGELPNGNG
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccccgcaagtgattaagcgtgcaaaatacaagacttcaattaaagacccggga
actcctggtcttctaactatgatggagaacaggtttgtgttcaggccaaatgatcccacg
tctccctctaagcttgatgtcggctttcatcaaattaaaggtcagaagaacactaaggag
ggatcaaataaaccaccttggcttaatatcagcaataataaggatgggagttacattttt
gagtttgagagttatcctgatcttcatgcatgccgagaaattattgccaacgcccttgag
gctgcaaaaggttcttccgctgcaacaatttcttctacagcaaaagcttcttcttctaca
aatgaacaatatagtacagcagagttagagctccggatgaagcttatgcaagaagacagt
gaactgcagaaacttcacaagcagtttgtaggcagtggtgtcttgacagaatctgagttc
tgggcaaccaggaagaagttgcttgatggagatagccgtaaaaagtcaaaacaacgggtt
ggttttaaaagttcgatgatactggacatcaaacctatgactgatggtcggatgaacaag
gttacattcaatttgactgatgagattaaatatcagattttcgccctgaaaccagcagtt
caccaggcatatattgatctcgttcccagtaagatgacagagaaagacttctggaacaaa
tattttcgagccgaatacctccacagtaccaaaaatgttgtagcagctgcagcagaagct
gctgaggatgaggaactggcgatttttttaaaggaagatgaaatattggcaagggaagct
cggcagaagattcagcgggttgatccaactttggatatggaagctgatcaaggggatgac
tatatacatcttccggatcatgggatctttcgtgatggcaccaaggacataactgaacta
cagaatgatcaatacaggaggactctatcgcaagaccttaacagacaaggcgctgttgtt
cttcaaggaagaaatctcgatgtggacccagaagatccaagaactatagcagaggcactt
atgcggtcaagacaggaacctagtgacagtgctgtacaggagagacttgataggcttact
cggatgactgagatagacgaccttcgagaatctcatgatcatccagttgctccattatgt
atcaaggatcctcgagactactttgatacacaacaagctaatgcacttagaactttggat
gactcgcgtactggtactgagcagacaaaacgcaagctgactactgaggaagcatatggc
gccttaaaggagtctatatctaaaattaagagcattggattgagcaattccacagttaaa
ccagaagttgctcttacggtttttaatgggctgacccagaatatttcaagtaccaaatat
caacttggaaagaatcctcgagagagtattctggatggcttgccaaacagaaccaaagag
gaactcttacatcattggatgtccattcaagaactactgaggcatttttggtcttcatat
ccaattacaacttcttctttgtatactaaggtaggcagactgaaggatgccatgtcacaa
atttatcgacagctagaggagataaaggaagctgtgcagtcagacttcaggcaccaggtc
tccctccttgttcgtccaatgcatcaggctctagatgctgcttttcagcattatgaagca
gacttacagaaaagagctgcaaagagtggagagttgccaaatgggaatgggtag
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