Rosa chinensis (China rose): 112193917
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Entry
112193917 CDS
T06020
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112193917
03015 mRNA surveillance pathway
112193917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112193917
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112193917
mRNA cycle factors
P-body specific factors
112193917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Glycos_transf_N
Motif
Other DBs
NCBI-GeneID:
112193917
NCBI-ProteinID:
XP_024189948
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All DBs
Position
3:complement(28889702..28900434)
Genome browser
AA seq
1191 aa
AA seq
DB search
MAVNTSSEMDHNEEESGGGAGAEPHGKQDDEEAVARLEEMKKSIESKMALRQSNLNPERP
DSGFLRTLDSSIKRNTAVIKKLKQINEEQREGLMDDLRSVNLSKFVSEAVTAICDAKLRS
SDIQAAVQICSLLHQRYKDFSPTLVQGLLKVFFPGKSGDDPDADRNLRAMKKRSTLKLLL
ELYFVGVIEDGGIFVNIIKDLTSGEHLKDRDTTQTNLTLLASFARQGRMFLGLPLSGPEI
HEEFFKGLNITPDQKKFFKKAFQAYYEAAAELLQSEHTSLRQMEHENARILNAKGELSDD
SASSYEKLRKSYDHLYRNVSALAEALDMQPPVMPEDGHTTRVTSGEDASSPAAGKDSSVL
EAIWDDEDTRAFYECLPDLRAFVPAVLLGEAESKVNEQSAKTQEQPTEPAPELDQSQQAT
EDAAESSADVGALQEGKIREKGKEKEEKDKDKIKDADKEKGDKKGENEKEKLKSIEGTNL
DALLQRLPGCVSRDLIDQLTVEFCYLNSKANRKKLVRSVFNVPRTSLELLPYYSRMVATL
STCMKDVSSMLLAMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPAGLVFSCLK
ACLDDFSHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVE
NAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTLEHVLRQLRKLPWGECEPYLLK
CFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVSVVDEVLEEIRLGLELNEYGMQQRRIAH
MRFLGELYNYEHVDSSVIFETLYLILIFGHGTTEQDVLDPPEDCFRIRMVITLLETCGHY
FDRGSSKRKLDRFLMHFQRYILSKGVLPLDVEFDLQDLFAELRPNMTRYSSLEEVNAALV
ELEEHSEKANNEKHSDTEKSSRRTTSNKMSVNEQGVANGTEGNGAVHEDHRDSDSDSGSG
TVDPDRHEEELDEENHDDGSESEEEDDDGGGPASDEEDEVHVRQKVAEVDPQEEADFELD
LKAVMQESMEQRRQELRGRPTLNMMIPMNVFEGSIKDHHGRVGGDSGDEGDEESGGSKDV
QVKVLVKRGNKQQTKQMYIPRDCSLIQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNG
LGNQTMNYAQSGGNRFAGRGSTWEGTSSRGGGPRRYHSSYSGAGVYYSRRK
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcaatacgagtagtgagatggatcacaatgaggaggaatccggtggtggtgcc
ggagctgaacctcatgggaagcaagatgatgaggaagccgttgctcggcttgaggaaatg
aagaaatcaatcgagtcaaagatggctctccgtcaaagcaatttgaaccccgagaggcct
gactcgggatttctgaggacattggattccagcattaaacgcaacacagcagttattaaa
aaactgaagcagataaatgaagagcagcgggaagggctgatggatgacttgagaagtgtc
aaccttagcaaatttgtcagtgaagctgttactgctatttgtgacgccaaacttagatcg
tcggacatacaagcagcagttcagatctgctctctgcttcatcaaagatacaaagacttc
tccccgaccctagttcaaggtcttttgaaagtcttctttcctggaaagtctggggatgac
ccagatgcagataggaacctgagagccatgaagaagcgtagcactttgaaactccttttg
gaactttactttgttggagttatagaagatggtggtatttttgtgaatattattaaagat
cttaccagtggagaacacttaaaggaccgggatactactcagacaaatttgactcttctt
gctagttttgctcggcagggaagaatgtttcttggtcttccactctctgggccagaaata
catgaagagttttttaagggccttaatatcacaccagatcaaaagaagttcttcaagaag
gcatttcaagcatattatgaagctgcagctgaactgcttcagtctgagcatacttcactt
cgccaaatggagcatgaaaatgcaagaatccttaatgctaaaggagagctcagtgatgat
agtgcctcttcatatgaaaagctgcggaaatcttatgaccatttgtaccgcaatgtctca
gctttagcagaagcacttgatatgcagcctccagtaatgccagaggatggtcacacaact
agggttactagcggagaggatgcttcatctccagctgctggaaaagattcttctgtactt
gaagccatatgggacgatgaagatactagggctttctatgaatgtttgccagatcttaga
gcatttgttccagctgtgttactgggagaagcagagtctaaagtcaatgagcaatctgca
aagacccaagagcaaccaactgaacctgcgcctgaattagaccagagtcaacaggctaca
gaagatgctgcggaatcatctgcagatgttggtgctttacaagaaggaaaaatcagagag
aaaggaaaggagaaggaagaaaaagataaagacaagattaaagatgcagacaaagagaag
ggtgacaagaagggagagaatgaaaaggagaaactaaaaagtatcgaagggacgaatttg
gatgctttactgcagaggctccctggttgtgtgagccgtgacctcattgaccaattgact
gtagagttttgttacctaaattctaaagcaaatcggaaaaaacttgtgaggtcagtgttt
aatgtccccaggacatcgttggagttactgccgtactactcacgcatggttgccactctg
tcgacttgtatgaaggatgtatcttccatgctcctggctatgttggaggaggagttcaat
ttcttaataaataaaaaggatcaaatgaacattgaaacaaagattaggaatattagattt
attggagaactctgcaagttcagaattgcaccagctggtcttgtgtttagttgtttaaag
gcttgtctagatgatttttctcatcataatattgatgttgcttgcaatcttcttgagact
tgtggccgttttctgtatcgctctcctgaaactactgtgcggatggctaacatgttggaa
atattaatgcgcttaaagaatgtaaaaaatttggatcctcggcacagcacccttgttgaa
aatgcttattacctgtgcaaaccgcctgagagatccgcacgagttgctaaagtccgtcct
ccattgcatcagtatataagaaagttgctattctcagatcttgataaatctacccttgag
catgtgctgaggcaattgcgtaaactaccatggggtgaatgtgagccatatcttttgaaa
tgctttatgaaggttcacaaagggaagtacggtcagatccatttgattgcttctctcact
gctggcctgagtcgctatcatgatgaatttgctgtctctgttgttgacgaggttttagag
gagatccggcttggccttgaattaaatgagtacggaatgcagcaaagacgaattgcccat
atgcgattcctaggagagttatacaactatgaacatgtagattcttctgttatatttgag
actctatacttgattctcatctttggccatggcacaacagagcaagatgtattagatcca
ccagaagattgtttccgcataaggatggttattactcttctcgaaacttgtggacattac
tttgaccgaggctcttctaagaggaaacttgatcgcttcttgatgcactttcagagatat
atactaagcaaaggtgtactaccactagatgttgagtttgacttacaggacttatttgca
gaattgcgtcccaatatgactcgatactcatcccttgaagaagttaatgcagctctggta
gagcttgaggagcactcggagaaggccaataatgagaagcactcagacactgaaaagtct
tcaaggaggacaacctccaataaaatgtcagtgaatgaacagggtgttgcgaatggtaca
gagggaaatggggcggtgcatgaagaccatagagatagtgacagtgattcaggaagtggc
actgttgatccagacagacatgaagaagaattggatgaagagaatcatgatgatggatca
gagagtgaagaggaggatgatgatgggggtggacctgcttctgacgaggaggatgaagtc
catgtcagacagaaggttgcagaggtggatcctcaggaagaagcagattttgagctggat
ctcaaggctgttatgcaggaaagcatggagcaacgaaggcaagagctgcgcggtcggcct
acattgaatatgatgataccaatgaatgtgtttgaggggtccatcaaggaccatcatgga
cgtgttggaggggacagtggtgatgagggggatgaggagtctggaggaagcaaggatgtc
caagtcaaagttctcgtgaagcgtggtaacaagcaacaaacaaaacagatgtacatccct
cgtgattgctcccttatacagagcacaaaacagaaagaagcggcagagcttgaagagaaa
caagacatcaagaggctagtcttggaatataatgatagagaagaggaggaacttaatgga
ttagggaaccagactatgaactatgcgcagagtggtggcaatagatttgctggtcgtggc
agcacttgggaaggaactagcagcagaggtggtggaccacgtcgatatcacagtagttat
tctggtgctggagtttattacagcaggaggaagtga
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