KEGG   Ricinus communis (castor bean): 8275235Help
Entry
8275235           CDS       T01087                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03030  DNA replication
rcu03410  Base excision repair
rcu03420  Nucleotide excision repair
rcu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    8275235
   03410 Base excision repair
    8275235
   03420 Nucleotide excision repair
    8275235
   03430 Mismatch repair
    8275235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rcu03032]
    8275235
   03400 DNA repair and recombination proteins [BR:rcu03400]
    8275235
Enzymes [BR:rcu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     8275235
    6.5.1.6  DNA ligase (ATP or NAD+)
     8275235
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     8275235
DNA replication proteins [BR:rcu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    8275235
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     8275235
DNA repair and recombination proteins [BR:rcu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     8275235
   NER (nucleotide excision repair)
    Other NER factors
     8275235
   MMR (mismatch exicision repair)
    Other MMR factors
     8275235
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 8275235
NCBI-ProteinID: XP_002523716
LinkDB All DBs
Position
Unknown
AA seq 796 aa AA seqDB search
MLTLRSCNCLRFISFPYHHHHRHHHHSKSLSSSFLIFCNKSSYFHSTLPLFIKSSFKSTM
STPRSAFDVLMKKSAANKKSQSSSPKKRKSPDSQIAPKTLINSTQSLQQQPPNTIQHKET
PQKPQDSSLSLGEEKKVDTAKKQRLAIAEMKGKIKSLMKNPKDFDPNEVVYWEKGENVPF
IFVCSAFEYLEDEKEKGRGNITNVACNMLRSVMSTTPDDLLALVYLLANRVAPAHEGVEL
GIGEAMIIKALAEAFGRTEKQVKKEYEGTGDLGRVAQASRSSQSMMRRPEPLTVSKVFNT
FQLIAKDSGKDSQDKKKNRIKALLVAATDCEPQYLIRLLQGKLRINLAGQTLLAALGQAA
VFSENHCTVPSNIQSPLDEAAKIVKQVYSVLPVYDRIVPALLNDGVWNLPKTCSFTPGVP
VGPMLAKPAKSVTEIVEKFQGKFTCEYKYDGERAQIHFLENGSVEIYSRNAERNTGKYPD
VVVAISRSKKSSVKSFVLDCEIVAYNRGEKKILPFQILSTRPRKNVVMSDIKVDVCIYAF
DMLYLNGKPLIEEQLEDRRKLLYDSFEEDPEHFQFATAITSNDLEEIQKFLDAAVDASCE
GLIIKTLDKDATYEPSKRSNNWVKLKKDYIESIGDSLDLVPIAAYHGRGKRTGVYGAFLL
ACYNSSTEEFESICKIGTGFSEQVLEERSNSLRAKVVPQPKSYYRYEEKIKPDVWFEPTE
VWEVKAADLTISPVHRAAVGIVNSDKGISLRFPRLMRVREDKSPEEATSSDQVADMYNAQ
KQNQPKVTQADSDDDQ
NT seq 2391 nt NT seq  +upstreamnt  +downstreamnt
atgctcacccttcgttcgtgtaattgtttgcgcttcatttcctttccttatcatcatcat
catcgtcatcatcaccattccaaatctctgtcttcctcgtttctcatattctgcaataaa
tcctcctattttcattctacacttcctctctttatcaaatccagtttcaaatccactatg
tctactcctcgctccgcattcgacgttctcatgaaaaaatccgccgcaaataaaaaatcc
cagtcttcttctcccaagaaacgcaaatcccctgattcccaaattgcccccaaaacccta
attaattccacgcaatctttacaacaacagccgcccaatacaattcagcataaggagacc
ccccaaaagccccaggactctagcttatcgctcggtgaagagaaaaaagttgatactgcc
aagaaacagcgtttggcaattgcagaaatgaagggaaagattaaatctttgatgaaaaat
cctaaagattttgacccaaatgaagtggtttattgggagaaaggtgaaaatgtccctttt
atatttgtttgttcagcttttgaatatttggaagatgagaaagagaagggcaggggtaat
attacaaatgttgcttgtaacatgttgaggagtgttatgagtaccactcctgatgatttg
ttggctctagtttatcttttggccaatcgggttgcgcccgctcatgagggcgttgagttg
ggtattggtgaagctatgattattaaggcacttgctgaggcctttgggaggaccgagaaa
caagttaagaaggaatatgagggaacaggagatttaggacgggttgctcaagcaagtcgc
tcatcacaatctatgatgcgaaggcctgagcctttaacagtttcaaaagttttcaacaca
tttcagctgattgcaaaggattctgggaaggacagtcaagataagaaaaagaatcgtatc
aaggcacttctggttgcagccaccgactgtgaacctcaatatctcattcgtctacttcag
ggaaagttgcgaatcaatttggcaggacagacacttttggctgcattgggacaagctgct
gtgttttctgaaaaccattgcactgtgccttcaaatattcagtctcctttagatgaggct
gcaaagattgttaaacaagtgtactctgtactccctgtctatgatagaatagtccctgct
cttctaaatgatggtgtatggaatctccccaagacatgtagctttacacctggtgtccca
gttggacccatgcttgcaaagccagccaaaagtgttactgaaatagtagaaaagttccag
ggtaaattcacctgtgaatacaagtatgatggtgaacgtgcccagatacattttctggag
aatggttcagttgagatatacagtcgaaatgctgagcggaatactggaaaatatcctgat
gttgttgttgcaatttcaagatcaaagaaatcctctgtgaaatctttcgttttggattgt
gaaatagttgcctataatcgtggggaaaagaaaattctgccctttcagatccttagcacc
cggccccggaaaaatgtggtaatgagtgacatcaaggtcgatgtttgcatatatgccttt
gatatgttgtaccttaatggcaaaccacttattgaagaacaactagaagatcgtagaaag
ctgctttatgattcatttgaggaagaccctgaacattttcagtttgcaacagcaataaca
tcaaatgatctcgaggaaattcaaaagttcctcgatgctgctgttgatgcaagttgcgag
ggtttaatcatcaaaacattggacaaggatgctacatacgagccttcgaagaggtcgaat
aactgggtaaaattgaagaaagattacatagaaagtattggcgactcgctggatcttgta
cctattgctgcttaccatggtcgtggaaagcgtacaggtgtctatggtgcttttcttctt
gcttgttacaacagcagtactgaggagtttgagagcatatgtaaaataggcactgggttt
tctgaacaagtgcttgaagaacgttccaatagtctgcgcgctaaagtagttcctcaacca
aagtcgtactacaggtatgaagaaaaaattaaaccagatgtgtggtttgagcccactgag
gtatgggaggtgaaagctgcagatttaactattagtcctgttcatcgtgcggcagttggt
atagtgaattctgataagggaatttctctgcggtttccacgtctaatgcgtgtccgggag
gacaagtctcccgaagaagccacatcatctgaccaggttgcagatatgtataatgctcag
aaacaaaatcagcctaaggttactcaagctgacagtgatgatgaccagtag

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