Ricinus communis (castor bean): 8286856
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Entry
8286856 CDS
T01087
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8286856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8286856
Enzymes [BR:
rcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
8286856
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8286856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
8286856
NCBI-ProteinID:
XP_002522771
UniProt:
B9S9V2
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All DBs
Position
9:6402667..6406320
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AA seq
699 aa
AA seq
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MTKQWPLKALSRALSRAYSSSSTSNSTPSFPLKHVVKSNFNSSLADLKRHVIAADFIAID
LEMTGITTAPWRESFEYDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDSDHHSFIAHPYNF
FIFREDCEFLCQATSLEFLAKYQFDFNTCILEGMSYLSRRQEEEALRRLNLRYEDSNLND
VGDVPLASITDILFSERMKNRLSEWRDGLLKNGNGIGDSQFQTIFYKMRPALCLSGFTSH
QLKLIQLVTRKHFENLAYVGCGQSSSLQELVVYIDSENDKDLLMKEVKDEYRKGAEMKIK
NAIGFRHVIDLLSSAQKLIVGHNCFLDIAHIHSKFLGPLPPTAEEFVSAVNKYFPHIIDT
KILLNANNVLLQRMKKSGTSLSAAFSLLCPQLATSSNKGINWASRPCVNVEVQVDDTRSS
NWSSGVKHEAGYDAFMTGCVFAQACNHLGVDFKLKSSSENLAHNEKLQKLINLLYISWIN
WDIIDLRTGNRVAESLGFNYLRKQRPNILFKNIVLIWRFPSRLKAGEIRECICKAFGLNS
VTSIYHVDETAVFVQFSKAELVSEFLVLKESLDRSNDPISVLHPLSKLLDGGNTCAADYE
TYKEICSSPISKVRFADQAAAVGINWKTKLVESKIDAESQHQDSFYKEDARTTKSASTKK
SNAGDHSVIDDLLSGRSACDQVIDSFYAAEDQRIRATNL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcaatggccgctaaaagcactctcgcgtgctctctcgcgtgcatactcgtcc
tcctctacctccaactctacgccgtcgtttcccctaaaacacgtcgtgaaatcaaacttc
aactcctcgctggctgacctcaaacgtcatgtcatcgccgccgattttatcgctatcgac
cttgaaatgaccggaatcaccacagctccatggcgcgagtcattcgaatacgatagattt
gacgtccgttaccttaaagtcaaagattccgccgagaagttcgccgtcgttcagttcggc
gtttgtccattccgttgggattccgatcaccactccttcattgctcatccgtataatttc
tttatatttcgcgaggattgtgaatttttatgccaggccacgtccctagagttcttagct
aaatatcagtttgatttcaatacttgtatactcgaaggaatgtcttatttatccagaagg
caggaggaggaggcacttagacgcttgaatttaagatatgaggatagtaatttgaatgat
gttggagacgtaccattggccagtattactgatattcttttcagtgaaagaatgaagaac
agattgagtgaatggcgtgatggtttattgaagaatggaaatgggattggggattctcag
tttcaaactattttctataagatgcgtccagctctttgtttgagtggttttacttcgcat
cagcttaagttgattcagctggtcactaggaagcattttgaaaatcttgcttatgttggt
tgtggtcaaagttcttctctgcaagaattagttgtatatatagactccgagaatgacaag
gacttacttatgaaagaggtgaaggatgagtaccgtaaaggggcggagatgaaaataaaa
aatgcaattggttttcgccatgttattgaccttctttcttctgcacagaagttgattgtt
ggtcacaattgcttcttggatattgcgcacatacacagcaaatttctaggtcctcttcct
ccaaccgcggaagaatttgtttccgctgttaacaagtattttccacacattattgatacc
aaaattctcttgaacgctaataatgtactccttcaaaggatgaagaaatcaggaacatca
ctctcagcagccttttctctactctgtccacaactagctacaagttcaaataagggcatt
aattgggcttctcgtccatgtgtgaatgtggaggttcaagtggatgatacaaggtcctcc
aattggagttctggagtcaaacatgaagctggttatgatgctttcatgacagggtgtgtc
ttcgctcaggcatgcaatcatctaggcgtcgattttaagctcaagtcatcctctgagaat
ctggctcataatgaaaagctccagaagctcatcaaccttctttatatcagttggattaat
tgggacataattgatctaagaactgggaatagggttgcagagtctttgggatttaattac
ctcagaaagcaacgtcctaacattctttttaagaatattgttttaatatggcgatttccg
tccagactcaaggctggggagataagagagtgcatctgtaaagcctttggcctaaactct
gttacatcaatctatcatgtggatgaaactgcagtttttgttcagttcagcaaggcagag
ttggtctctgaatttctagtcctgaaagaatccttggatcgaagtaatgatcccatatct
gttttgcatcctctatcaaaattgttggatggtggaaatacgtgtgctgcagattatgaa
acttataaagagatctgcagttcacccatctccaaagttcgttttgcagatcaggcagcg
gctgttggtatcaactggaagaccaagttggtagaatccaaaatagatgcagagtcccaa
caccaagacagtttctataaagaagatgcaagaactactaaatcggcttctactaaaaag
agcaatgcaggcgatcacagtgtcatagatgatctattgagcggccgatcagcatgtgat
caggttatcgattccttttatgctgcagaagaccaaaggattagagctacaaatttgtga
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