Rhizorhabdus dicambivorans: CMV14_20985
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Entry
CMV14_20985 CDS
T05084
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rdi
Rhizorhabdus dicambivorans
Pathway
rdi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CMV14_20985 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rdi03400
]
CMV14_20985 (ligD)
Enzymes [BR:
rdi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CMV14_20985 (ligD)
DNA repair and recombination proteins [BR:
rdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CMV14_20985 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ATE66580
UniProt:
A0A2A4G2C7
LinkDB
All DBs
Position
complement(4467396..4469936)
Genome browser
AA seq
846 aa
AA seq
DB search
MAGLSEYNRKRDFKKTREPAGKLDPSNRHRFIVQKHDATRLHYDFRLEMDGVLKSWAVTR
GPSLDPADKRLAVRTEDHPISYAEFEGSIPEGEYGGGTVMLWDKGSWAPIEGKSEKDLEK
GHLHFTLDGERMKGEWLLIRLKPRPGEKRGRENWLLRKIDDEAAGGSDDLVARELTSVKT
GRTMAEIAADRKGETSLKGKRGKAFDALMAKAESHAAEVSRRPGGGRGRKRSGNALAPGS
GKVPAFRKPQLATLVDSVPTGSAWIHEIKFDGYRALVAAAGGKVKIYTRSGLDWTEKFQP
VADAIAALDLPPALIDGEIVSLDEQGNPSFSALQKAIKGEGGGFELFAFDLLSLDGQDLT
GLGTVERKTRLAGLLPDQHPMIHYADHVIGAGEKLYAAMCRAGQEGIISKRADAIYRGDR
STSWLKVKCTRRQEFVIIGWSRSDKSSRRFRALLLAQHKDGKLVYAGKVGTGFNQDSMEM
LTAKFEKRARETPAADVPRAERRGAHWIEPDLVAEIAFAEFTHDDVLRQASFIGLRSDKK
AAEVRREEPMPVEQVDKPEDSDVKITNPDRVIFPEAKVTKGDLAGYYRTIAPLILPWLAH
RPVSLVRCPQGRGKQCFFQKHDSGSFGDHVHHVPIREKDGQTEDYLYLDDAAGILACVQM
GTIEFHIWGSRVQDIEKPDRMIFDLDPDVGLDFADVKKAAKDIRTMLADIGLVSFPMLSG
GKGIHVVVPLRPEAEWPVVKDFSHRFAEALAQAEPERFVANMAKAKRVGRIFIDYLRNQR
GATAVVPYGARARENAPVAVPIGWEELDGFDKAGAFTIRDTKTLLKRATSRTLKGWGVAD
QSLPNL
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcctttccgaatataatcgcaagcgcgatttcaagaagacgcgcgagcctgct
ggaaagctcgacccttccaaccgtcaccgcttcatcgtccagaagcatgatgcgacccgg
ctccattatgatttccggctggagatggatggcgtgctgaagagctgggcggtgacgcgc
ggccccagcctcgatcccgccgacaagcgtctcgccgtccgcaccgaggaccacccgatc
tcctatgctgaattcgagggcagtatccccgagggcgaatatggcggcggcacggtgatg
ctgtgggacaagggcagctgggcgccgatcgaaggcaagagcgagaaggacctggagaag
ggccatctccacttcaccctcgatggcgagcggatgaagggcgaatggctgctgatccgg
ctgaagcccaggcctggcgaaaagcgcggccgcgagaactggctgctccgcaagatcgac
gacgaggcggcgggcggcagcgacgatctcgtcgcgcgcgaactgaccagcgtgaagacc
ggccgtacgatggcggagatcgccgccgacaggaagggcgagaccagcctgaagggcaag
cgcggcaaggcgttcgatgctttgatggcaaaggcggagagccatgccgctgaagtcagc
cgtcgccccggcggaggccggggccgcaagagatcgggcaatgccttggcccctggcagc
ggcaaggtgccggctttccgcaagccccagcttgccacgctggtcgacagcgttcccacc
ggcagcgcctggatccacgagatcaagttcgacggctatcgcgcgctggtcgcggcggcg
ggcggcaaggtgaagatctacacccgctcgggcctcgactggaccgagaaattccagccc
gtcgccgacgccatcgccgcgctggacctgcccccggccctgatcgacggcgagatcgtc
agtctcgacgagcagggcaatcccagcttctccgccctgcagaaggcgatcaagggcgaa
ggcggcggtttcgagctgttcgccttcgacctgctgtcgctggacggacaggatctgacg
ggcctcggcacggtggaacgcaagacgaggcttgccgggctgttgcccgaccagcatccg
atgatccattatgccgatcatgtcatcggcgccggcgagaagctatacgccgcgatgtgc
agggcggggcaggaaggcatcatctcgaagcgcgccgacgcgatctatcgcggggatcgc
agcaccagctggctgaaggtcaaatgcacgcggcggcaggagttcgtgatcatcggctgg
agccgcagcgacaagagcagtcggcgcttccgggcgctgctgctggcccagcacaaggac
ggcaagctggtttatgccggcaaggtcggcacgggtttcaaccaggacagcatggagatg
ctgacggcgaagttcgagaagcgcgcccgcgagacgcccgctgccgacgtcccccgcgcg
gagcggcggggcgctcactggatcgagcccgatcttgtcgccgaaatcgccttcgccgaa
ttcactcatgacgatgtgttgcgccaggccagcttcatcggcctgcgttcggacaagaag
gccgccgaagtacgacgggaggagccgatgccggtggaacaggtcgacaagcccgaagat
tcggatgtgaagatcaccaatcccgaccgggtgatcttccccgaggcgaaagtcaccaag
ggcgatctcgccggctattaccggacgatcgcgccgctgatcctgccttggctggcgcac
cgcccggtcagcctggtccggtgcccgcaggggcgcggcaagcaatgcttcttccagaag
catgattcgggttcgttcggcgaccatgtccaccacgtccccatccgggagaaggacggc
cagaccgaggactatctctatctcgacgacgcggcgggcatccttgcctgcgtgcagatg
gggacgatcgagttccacatctggggatcgcgggtccaggatatcgagaagcccgatcgc
atgatcttcgatctcgatcccgatgtcgggctcgatttcgccgacgtgaagaaggcggcg
aaggacatccggacgatgttggccgacatcgggctggtcagtttcccgatgctgtcgggc
ggcaagggcatccatgtcgtcgtgccgttgcggcccgaggccgaatggccggtggtcaag
gatttttcccaccgcttcgccgaggcgctggcccaggccgagcccgagcgcttcgtcgcc
aacatggccaaggccaagcgggtgggccgcatcttcatcgattatctgcgcaaccagcgg
ggcgcgaccgcggtggtgccctatggcgcgcgggcgcgcgagaatgccccggtggcggtg
ccgatcggatgggaggagcttgacggcttcgacaaggccggtgccttcacgatccgtgat
acgaagacattgctgaagcgggccacatcgaggacgctcaagggatggggcgtggcggac
cagtcgctgccgaatctataa
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