KEGG   Rhizorhabdus dicambivorans: CMV14_20985Help
Entry
CMV14_20985       CDS       T05084                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rdi  Rhizorhabdus dicambivorans
Pathway
rdi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rdi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CMV14_20985 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rdi03400]
    CMV14_20985 (ligD)
Enzymes [BR:rdi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CMV14_20985 (ligD)
DNA repair and recombination proteins [BR:rdi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CMV14_20985 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ATE66580
UniProt: A0A2A4G2C7
LinkDB All DBs
Position
complement(4467396..4469936)
Genome map
AA seq 846 aa AA seqDB search
MAGLSEYNRKRDFKKTREPAGKLDPSNRHRFIVQKHDATRLHYDFRLEMDGVLKSWAVTR
GPSLDPADKRLAVRTEDHPISYAEFEGSIPEGEYGGGTVMLWDKGSWAPIEGKSEKDLEK
GHLHFTLDGERMKGEWLLIRLKPRPGEKRGRENWLLRKIDDEAAGGSDDLVARELTSVKT
GRTMAEIAADRKGETSLKGKRGKAFDALMAKAESHAAEVSRRPGGGRGRKRSGNALAPGS
GKVPAFRKPQLATLVDSVPTGSAWIHEIKFDGYRALVAAAGGKVKIYTRSGLDWTEKFQP
VADAIAALDLPPALIDGEIVSLDEQGNPSFSALQKAIKGEGGGFELFAFDLLSLDGQDLT
GLGTVERKTRLAGLLPDQHPMIHYADHVIGAGEKLYAAMCRAGQEGIISKRADAIYRGDR
STSWLKVKCTRRQEFVIIGWSRSDKSSRRFRALLLAQHKDGKLVYAGKVGTGFNQDSMEM
LTAKFEKRARETPAADVPRAERRGAHWIEPDLVAEIAFAEFTHDDVLRQASFIGLRSDKK
AAEVRREEPMPVEQVDKPEDSDVKITNPDRVIFPEAKVTKGDLAGYYRTIAPLILPWLAH
RPVSLVRCPQGRGKQCFFQKHDSGSFGDHVHHVPIREKDGQTEDYLYLDDAAGILACVQM
GTIEFHIWGSRVQDIEKPDRMIFDLDPDVGLDFADVKKAAKDIRTMLADIGLVSFPMLSG
GKGIHVVVPLRPEAEWPVVKDFSHRFAEALAQAEPERFVANMAKAKRVGRIFIDYLRNQR
GATAVVPYGARARENAPVAVPIGWEELDGFDKAGAFTIRDTKTLLKRATSRTLKGWGVAD
QSLPNL
NT seq 2541 nt NT seq  +upstreamnt  +downstreamnt
atggcgggcctttccgaatataatcgcaagcgcgatttcaagaagacgcgcgagcctgct
ggaaagctcgacccttccaaccgtcaccgcttcatcgtccagaagcatgatgcgacccgg
ctccattatgatttccggctggagatggatggcgtgctgaagagctgggcggtgacgcgc
ggccccagcctcgatcccgccgacaagcgtctcgccgtccgcaccgaggaccacccgatc
tcctatgctgaattcgagggcagtatccccgagggcgaatatggcggcggcacggtgatg
ctgtgggacaagggcagctgggcgccgatcgaaggcaagagcgagaaggacctggagaag
ggccatctccacttcaccctcgatggcgagcggatgaagggcgaatggctgctgatccgg
ctgaagcccaggcctggcgaaaagcgcggccgcgagaactggctgctccgcaagatcgac
gacgaggcggcgggcggcagcgacgatctcgtcgcgcgcgaactgaccagcgtgaagacc
ggccgtacgatggcggagatcgccgccgacaggaagggcgagaccagcctgaagggcaag
cgcggcaaggcgttcgatgctttgatggcaaaggcggagagccatgccgctgaagtcagc
cgtcgccccggcggaggccggggccgcaagagatcgggcaatgccttggcccctggcagc
ggcaaggtgccggctttccgcaagccccagcttgccacgctggtcgacagcgttcccacc
ggcagcgcctggatccacgagatcaagttcgacggctatcgcgcgctggtcgcggcggcg
ggcggcaaggtgaagatctacacccgctcgggcctcgactggaccgagaaattccagccc
gtcgccgacgccatcgccgcgctggacctgcccccggccctgatcgacggcgagatcgtc
agtctcgacgagcagggcaatcccagcttctccgccctgcagaaggcgatcaagggcgaa
ggcggcggtttcgagctgttcgccttcgacctgctgtcgctggacggacaggatctgacg
ggcctcggcacggtggaacgcaagacgaggcttgccgggctgttgcccgaccagcatccg
atgatccattatgccgatcatgtcatcggcgccggcgagaagctatacgccgcgatgtgc
agggcggggcaggaaggcatcatctcgaagcgcgccgacgcgatctatcgcggggatcgc
agcaccagctggctgaaggtcaaatgcacgcggcggcaggagttcgtgatcatcggctgg
agccgcagcgacaagagcagtcggcgcttccgggcgctgctgctggcccagcacaaggac
ggcaagctggtttatgccggcaaggtcggcacgggtttcaaccaggacagcatggagatg
ctgacggcgaagttcgagaagcgcgcccgcgagacgcccgctgccgacgtcccccgcgcg
gagcggcggggcgctcactggatcgagcccgatcttgtcgccgaaatcgccttcgccgaa
ttcactcatgacgatgtgttgcgccaggccagcttcatcggcctgcgttcggacaagaag
gccgccgaagtacgacgggaggagccgatgccggtggaacaggtcgacaagcccgaagat
tcggatgtgaagatcaccaatcccgaccgggtgatcttccccgaggcgaaagtcaccaag
ggcgatctcgccggctattaccggacgatcgcgccgctgatcctgccttggctggcgcac
cgcccggtcagcctggtccggtgcccgcaggggcgcggcaagcaatgcttcttccagaag
catgattcgggttcgttcggcgaccatgtccaccacgtccccatccgggagaaggacggc
cagaccgaggactatctctatctcgacgacgcggcgggcatccttgcctgcgtgcagatg
gggacgatcgagttccacatctggggatcgcgggtccaggatatcgagaagcccgatcgc
atgatcttcgatctcgatcccgatgtcgggctcgatttcgccgacgtgaagaaggcggcg
aaggacatccggacgatgttggccgacatcgggctggtcagtttcccgatgctgtcgggc
ggcaagggcatccatgtcgtcgtgccgttgcggcccgaggccgaatggccggtggtcaag
gatttttcccaccgcttcgccgaggcgctggcccaggccgagcccgagcgcttcgtcgcc
aacatggccaaggccaagcgggtgggccgcatcttcatcgattatctgcgcaaccagcgg
ggcgcgaccgcggtggtgccctatggcgcgcgggcgcgcgagaatgccccggtggcggtg
ccgatcggatgggaggagcttgacggcttcgacaaggccggtgccttcacgatccgtgat
acgaagacattgctgaagcgggccacatcgaggacgctcaagggatggggcgtggcggac
cagtcgctgccgaatctataa

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