Rhizobium etli bv. mimosae Mim1: REMIM1_CH04029
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Entry
REMIM1_CH04029 CDS
T02778
Name
(GenBank) RNA ligase LigT-like protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rel03016
]
REMIM1_CH04029
Enzymes [BR:
rel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
REMIM1_CH04029
Transfer RNA biogenesis [BR:
rel03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
REMIM1_CH04029
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AGS23741
UniProt:
S5S8J7
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All DBs
Position
complement(4044398..4044991)
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AA seq
197 aa
AA seq
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MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDGRTADEIVERLDR
IDRPEFQFRLEGIGSFGSKKPHSVWAGVSQSPEMYALQGEIERICQRIGLPPDARKFMPH
VTLARLKSSRLDDVVQYLAGRGNFHTATFTAPRFVLLSSRESVGGGPYLTEEVFPLHEAR
STPSASSRLLQPVKSLV
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgccgagactgtttaccgccctcgaaattccgcgcaatgcggcgatgagtctttcattg
ctgcgcggtggcctccccggagcacgatggattgatgtggaaaattaccacatcacgctg
cgcttcatcggtgatgtcgacggccgcacggccgatgaaatcgtcgaacgcctcgaccgg
atcgaccggcctgaattccagttccgcctcgaaggcatcggttccttcggctcgaagaaa
ccgcattcggtctgggccggcgtctcgcaatcacctgagatgtacgccctgcagggtgag
atcgagcgcatctgccagcggatcggcctgccgccggatgcgcgcaaattcatgccgcat
gtgacgctggcacggctcaaatcctcgcggctcgacgatgtcgtgcaatatctggccgga
cgcggcaacttccacaccgcgaccttcacggcgccacgattcgtgctgctttcgtcgcgc
gaatcggttggcggcggaccctacctgacagaggaagtgttcccgctgcatgaggcacgt
tcgacgccaagcgcttcgagcaggctgctgcagccggtcaagagcctggtatag
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