KEGG   Rhizobium esperanzae: AMJ99_CH00651Help
Entry
AMJ99_CH00651     CDS       T05681                                 

Definition
(GenBank) ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rez  Rhizobium esperanzae
Pathway
rez03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rez00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AMJ99_CH00651
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rez03400]
    AMJ99_CH00651
Enzymes [BR:rez01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMJ99_CH00651
DNA repair and recombination proteins [BR:rez03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AMJ99_CH00651
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S NdhM DUF2967
Motif
Other DBs
NCBI-ProteinID: ANL02244
LinkDB All DBs
Position
complement(653686..655665)
Genome map
AA seq 659 aa AA seqDB search
MTLETYQAKRNFKLAPKSKDGKAVSAKRPAAKARSPAPRERDWPKGARKGAMPDFIEPAL
AKLKPKPPAGDRWIHEIKFDGYRLQVRVENGKVRMLTRSGLDWTEKFGSEVVEAFAALPV
QSAVVDGEIVVERDTGASDFSALQRDLSEGRDDRFVFYAFDLLHLDGHSLVNVALIDRKQ
LLESLLPDDNDKLRYSAHFNESGSLVLDHACRLSLEGVISKLRDSKYTSGRKGDWIKSKC
SHRQEFVIGGYVPSTSMKNAIGSLAMGYYQGGELKHVGRVGTGYTAATAQLLYEKLSRLT
QNENSFDDKLTSEERRGLIYVKPQLVGEVEFRAWSADANLRHAAFRGLREDKPAKDVTRE
TEKIMAPPLPKSAVALTHPDRIYWPDEGVTKEGLANYYAEVWRFMAPYVVNRPLALLRLP
DGINGRQRFFQKHAWKGMNPHIEEITDPKDKQGEKLLRISDFDGIVALVQSAVLEIHPWG
ATTDNWEKPDMITMDLDPGDEVEWEDVIAAAYELKERLEAEGLAAFVKTSGGKGLHVVTP
LTPKAGWVEVKGFAKWLADSMSADDPDRYLATATKAKRTGRIFIDYLRNGRGNTAVAPYS
ARARPGAAVSMPLEWSELTADVGPTYFTVDNTPTRLDALPRDPWDGFFAAAKPLEKKKR
NT seq 1980 nt NT seq  +upstreamnt  +downstreamnt
atgaccctcgaaacctatcaggcgaagcgcaatttcaaactcgctcccaaatcgaaagac
ggcaaggcggtttccgccaaaagaccggcggcaaaggccagatccccggcaccacgagaa
cgcgactggccgaagggtgcgcgcaagggcgcaatgcccgattttatcgaaccggcgctt
gccaagctgaagccgaagccgccggctggtgaccgctggatccacgaaatcaagttcgac
ggctaccggctgcaggtcagggtcgagaacggcaaggtcagaatgttgacccgcagcggt
ctcgactggacggagaaattcggcagcgaggtggtcgaggcctttgccgccctgccggtg
caatcggcggtggtcgacggcgaaatcgtcgtcgagcgcgataccggcgcctcggatttc
tcagcgctccaacgcgatctgagcgagggccgcgacgatcgcttcgtcttctatgccttc
gatcttctccacctcgacggccacagcctggtcaatgtggcgctgatcgatcgcaagcag
ctgctcgaaagcctgctgcccgacgataacgacaagctgcgctacagcgcgcatttcaac
gaaagcggcagcctagtgctcgaccatgcctgccggctcagcctcgaaggggtgatttcc
aaactgcgcgacagcaaatacacgtcgggacgcaaaggcgattggatcaaatcgaaatgc
tcgcaccggcaggaattcgtcatcggcggctacgtgccgtcgacatcgatgaagaatgcg
atcggctcactggcgatgggctattaccaaggcggcgaactcaagcatgtcgggcgcgtc
ggcaccggatatacggcagcaaccgctcaactgctttacgagaaattgtcgcgtctgacg
cagaacgaaaactcgttcgacgacaagctgacgtcagaggagcggcgcgggctgatctat
gtcaagccgcagctggtcggcgaagtcgagttccgcgcctggtcggctgacgccaatctg
cgccatgcagccttccgcggcctgcgcgaagacaagcctgcgaaagacgtgacgcgcgag
acggaaaagatcatggcccctcccctgccgaaatcagcggtggcgctgacccacccggac
cgcatctactggccggacgagggcgttaccaaggaggggctggccaattattacgccgag
gtctggcgcttcatggcgccttatgtcgtcaatcggccgctggcgctcctgcgcctgccg
gacgggatcaacggccggcagcggtttttccagaaacatgcctggaagggcatgaatccg
catatcgaggagatcaccgatcccaaggacaagcagggggaaaagctgctcagaattagc
gatttcgacggtatcgtggcgctggtgcaatcggccgtgcttgaaatccatccctggggc
gcaacgaccgacaattgggaaaagcccgatatgatcaccatggacctcgatcccggcgac
gaggtggagtgggaggatgtgatcgccgccgcttacgaattgaaggaacggctggaggcc
gaaggcctcgccgccttcgtcaagacctcgggcggcaaggggctgcatgtggtgacgccg
ctcacgccgaaggccggctgggtcgaggtgaagggtttcgccaaatggcttgccgacagc
atgtccgccgacgatcccgaccgctatctggcgacggcgacgaaggccaagcgcacgggg
aggatcttcatcgactatctccgcaacggccgcggcaatacggcggtcgcgccctattcg
gcacgggcacggccaggcgccgcggtctcgatgccgctggaatggagcgagctcaccgcc
gacgtcggaccgacctatttcacagtggacaatacaccgacccggctcgacgcgctgccg
cgagatccttgggacggatttttcgctgcagcgaaaccgttggaaaagaagaagcggtag

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