Rhizobium esperanzae: AMJ99_CH00651
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Entry
AMJ99_CH00651 CDS
T05681
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rez
Rhizobium esperanzae
Pathway
rez03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMJ99_CH00651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rez03400
]
AMJ99_CH00651
Enzymes [BR:
rez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMJ99_CH00651
DNA repair and recombination proteins [BR:
rez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMJ99_CH00651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
NdhM
Motif
Other DBs
NCBI-ProteinID:
ANL02244
LinkDB
All DBs
Position
complement(653686..655665)
Genome browser
AA seq
659 aa
AA seq
DB search
MTLETYQAKRNFKLAPKSKDGKAVSAKRPAAKARSPAPRERDWPKGARKGAMPDFIEPAL
AKLKPKPPAGDRWIHEIKFDGYRLQVRVENGKVRMLTRSGLDWTEKFGSEVVEAFAALPV
QSAVVDGEIVVERDTGASDFSALQRDLSEGRDDRFVFYAFDLLHLDGHSLVNVALIDRKQ
LLESLLPDDNDKLRYSAHFNESGSLVLDHACRLSLEGVISKLRDSKYTSGRKGDWIKSKC
SHRQEFVIGGYVPSTSMKNAIGSLAMGYYQGGELKHVGRVGTGYTAATAQLLYEKLSRLT
QNENSFDDKLTSEERRGLIYVKPQLVGEVEFRAWSADANLRHAAFRGLREDKPAKDVTRE
TEKIMAPPLPKSAVALTHPDRIYWPDEGVTKEGLANYYAEVWRFMAPYVVNRPLALLRLP
DGINGRQRFFQKHAWKGMNPHIEEITDPKDKQGEKLLRISDFDGIVALVQSAVLEIHPWG
ATTDNWEKPDMITMDLDPGDEVEWEDVIAAAYELKERLEAEGLAAFVKTSGGKGLHVVTP
LTPKAGWVEVKGFAKWLADSMSADDPDRYLATATKAKRTGRIFIDYLRNGRGNTAVAPYS
ARARPGAAVSMPLEWSELTADVGPTYFTVDNTPTRLDALPRDPWDGFFAAAKPLEKKKR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcgaaacctatcaggcgaagcgcaatttcaaactcgctcccaaatcgaaagac
ggcaaggcggtttccgccaaaagaccggcggcaaaggccagatccccggcaccacgagaa
cgcgactggccgaagggtgcgcgcaagggcgcaatgcccgattttatcgaaccggcgctt
gccaagctgaagccgaagccgccggctggtgaccgctggatccacgaaatcaagttcgac
ggctaccggctgcaggtcagggtcgagaacggcaaggtcagaatgttgacccgcagcggt
ctcgactggacggagaaattcggcagcgaggtggtcgaggcctttgccgccctgccggtg
caatcggcggtggtcgacggcgaaatcgtcgtcgagcgcgataccggcgcctcggatttc
tcagcgctccaacgcgatctgagcgagggccgcgacgatcgcttcgtcttctatgccttc
gatcttctccacctcgacggccacagcctggtcaatgtggcgctgatcgatcgcaagcag
ctgctcgaaagcctgctgcccgacgataacgacaagctgcgctacagcgcgcatttcaac
gaaagcggcagcctagtgctcgaccatgcctgccggctcagcctcgaaggggtgatttcc
aaactgcgcgacagcaaatacacgtcgggacgcaaaggcgattggatcaaatcgaaatgc
tcgcaccggcaggaattcgtcatcggcggctacgtgccgtcgacatcgatgaagaatgcg
atcggctcactggcgatgggctattaccaaggcggcgaactcaagcatgtcgggcgcgtc
ggcaccggatatacggcagcaaccgctcaactgctttacgagaaattgtcgcgtctgacg
cagaacgaaaactcgttcgacgacaagctgacgtcagaggagcggcgcgggctgatctat
gtcaagccgcagctggtcggcgaagtcgagttccgcgcctggtcggctgacgccaatctg
cgccatgcagccttccgcggcctgcgcgaagacaagcctgcgaaagacgtgacgcgcgag
acggaaaagatcatggcccctcccctgccgaaatcagcggtggcgctgacccacccggac
cgcatctactggccggacgagggcgttaccaaggaggggctggccaattattacgccgag
gtctggcgcttcatggcgccttatgtcgtcaatcggccgctggcgctcctgcgcctgccg
gacgggatcaacggccggcagcggtttttccagaaacatgcctggaagggcatgaatccg
catatcgaggagatcaccgatcccaaggacaagcagggggaaaagctgctcagaattagc
gatttcgacggtatcgtggcgctggtgcaatcggccgtgcttgaaatccatccctggggc
gcaacgaccgacaattgggaaaagcccgatatgatcaccatggacctcgatcccggcgac
gaggtggagtgggaggatgtgatcgccgccgcttacgaattgaaggaacggctggaggcc
gaaggcctcgccgccttcgtcaagacctcgggcggcaaggggctgcatgtggtgacgccg
ctcacgccgaaggccggctgggtcgaggtgaagggtttcgccaaatggcttgccgacagc
atgtccgccgacgatcccgaccgctatctggcgacggcgacgaaggccaagcgcacgggg
aggatcttcatcgactatctccgcaacggccgcggcaatacggcggtcgcgccctattcg
gcacgggcacggccaggcgccgcggtctcgatgccgctggaatggagcgagctcaccgcc
gacgtcggaccgacctatttcacagtggacaatacaccgacccggctcgacgcgctgccg
cgagatccttgggacggatttttcgctgcagcgaaaccgttggaaaagaagaagcggtag
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