Rhinolophus ferrumequinum (greater horseshoe bat): 117036170
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Entry
117036170 CDS
T07722
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
117036170 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rfq00536
]
117036170 (COL13A1)
Glycosaminoglycan binding proteins [BR:
rfq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117036170 (COL13A1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117036170
NCBI-ProteinID:
XP_032986764
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Position
16:48121683..48196012
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AA seq
588 aa
AA seq
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MWLPQGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKLGHPGPKGE
MGLMGPRGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQG
PPGPPGPPGPSGPLGHPGLPGPMGPPGFPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHG
AKGAPGISVAGEKGEPGTPGAKGEKGAAGSPGLLGLLGQKGEKGDAGNSIGGNRGEPGPP
GLPGSPGPKGEAGVNGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGEMVDYNANI
NEALQEIRTLALIGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP
PGPQGPPGKPGPAGIKGEDGHPGSLGEKGEKGETGQAGPPGLDGPTGEKGEPGGQGRPGA
TGLPGPIGLPGFTGEKGEPGEKGDPGVEVPGPAGPEGPPGPPGLQGIPGPKGEAGLAGAK
GEKGVQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPP
GDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtggctgccccagggagtaaagggccaaccaggcgagaagggggccccaggagatgcc
gggatgtccatcatcggtccccgcggcccccctggtcagccgggcactcgaggttttcct
ggatttccgggtcccattgggctagacggcaaactgggccaccccggaccaaaaggggag
atgggcctgatgggtccccgaggacagccgggacctcaaggacaaaaaggagaaaagggt
cagtgtggagagtacccacaccggctgctgcctctcctcaattcagtgcgactggctcca
cccccagtcataaaaaggcggaccttccagggtgaacagggccaggctggcatccaaggc
ccaccagggccaccaggcccccctggaccgagtggacctctggggcacccaggacttccg
gggcccatggggccacctggctttcctgggcctcctggaccaaagggagatccagggatc
cagggctaccatggccggaagggagaacggggcatgccagggatgccgggcaaacatgga
gcaaagggggctcctggaatctctgtggctggggagaagggtgagccagggaccccagga
gccaagggtgagaagggggctgccggctccccggggctacttggcctcctggggcagaag
ggagagaaaggcgatgctggcaactccattggcggaaacagaggggagcccggccctcca
gggctccctgggtccccagggccaaagggagaagctggtgtcaatggccaggccggcccc
ccaggacggcagggagacaagggggagcctggagcggctggagaacagggaccagctggc
cccaagggctccaagggagaaccagggaaaggagagatggtggattataatgcaaacatc
aacgaggctctccaggagatccggacgctggccttgatcggtccccctggtcttccgggg
caaattggcccacctggagctccagggatcccaggccagaagggggagattggacttcca
ggccctcccggacacgatggggaaaagggacctcgaggcaaaccaggagacatgggccct
cctggtccccaaggccccccaggaaagcctgggccggcaggaatcaagggagaagatgga
cacccggggagcctgggagagaagggggagaaaggggagacggggcaggcaggcccaccg
ggtctagatggcccaactggggagaaaggagaaccaggtggccaagggagacccggagcg
acaggattgcctggccctattgggctcccgggatttacaggagaaaaaggagaacccggg
gagaaaggtgacccaggagtggaggtacctgggccagcagggccagaggggcctcccgga
cctccggggctccaaggcattcctggaccaaagggggaagcaggactagctggagcaaaa
ggagagaagggtgtccagggagaaaaaggagaccgaggtcctctgggattacccggtact
ccaggaccaattggagttccaggcccagcgggaccaaagggcgagaggggcagcaaaggc
gaccctgggatgacaggaccaacgggagcagctgggcttcctggtttacatggaccaccc
ggggacaaaggaaaccggggggagagggggaagaaaggctctagagggcctaaaggggat
aagggagaccaaggagcgcctggattagatgccccttgtccattgggtgaagacggccta
ccagtccagggctgctggaacaagtga
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