Pseudorhizobium flavum: RFYW14_02522
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Entry
RFYW14_02522 CDS
T07144
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rfv
Pseudorhizobium flavum
Pathway
rfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RFYW14_02522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfv03019
]
RFYW14_02522
Enzymes [BR:
rfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RFYW14_02522
Messenger RNA biogenesis [BR:
rfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RFYW14_02522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Helicase_RecD
UTP25
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAD6612803
LinkDB
All DBs
Position
1:2517606..2519141
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AA seq
511 aa
AA seq
DB search
MRFWRPEKVFDLTNFHELGLAKQLVANLSTLGYDTPTPIQAEAIPHLLQGRDLIGLAQTG
TGKTAAFGLPLIEMLSKDPKRPDNRTTRTLILAPTRELVNQIAVNLKAYVRGMPLKVNSV
VGGASINKQQQMLEKGTDILVATPGRLLDLIARKAIGLTTVRYLVLDEADQMLDLGFIHD
LRKISKMVPKKRQTLLFSATMPKAIAELAGDYLTDPIQVSVTPPGKAADKVEQYVHFVGG
KNDKTELLKKTLTANAGGRAIVFMRTKHTAEKLMKHLDQVGYSVASIHGNKSQGQRERAL
KGFRDGEIQTLIATDVAARGIDIPDVTHVFNYDLPEVPDAYIHRIGRTARAGRDGIAIAF
CTSEETGLLRDIEKLMGIEIATASGERPEGLNRPARGNNNSRGGNRGRGNGQPAGGEGRP
QQRKRPARKPFFQSEGGEGRGDGQERGAQPQANRPARKDHRKGNAPAAHGAHESANQRNR
NGHGRPAQKASGNPGPVRFGGGNEGRNRRPA
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcttttggcgccccgaaaaggtattcgacttgacgaatttccatgagcttggcctc
gccaagcagctcgtagccaacctttccaccctgggctacgacactccgacgccgatccag
gctgaggctatcccgcatcttctccagggccgcgacctcattggtctcgcccagaccggc
accggcaagacggccgccttcggcctgccgctcatcgagatgctgtcgaaggaccccaag
cgtcccgacaaccgcacgacgcgtactctgatcctcgcaccgactcgcgaactggtgaac
cagatcgccgtcaacctgaaggcttatgtccgtggcatgccgctgaaggtcaattcggtg
gtcggcggcgcatccatcaacaagcagcagcagatgctggaaaagggcaccgacatcctc
gtcgcaacgcccggccgcctgctggacctcattgcccgcaaggcgatcggcctgaccacc
gtccgctatctcgtcctcgacgaggccgaccagatgctcgacctcggcttcatccacgac
cttcgcaagatctccaagatggtgccgaagaagcgccagaccctgctcttctcggcgacc
atgccgaaggcgattgccgaactggctggcgactacctgacggatccgatccaggtgtcg
gtgacgcctccgggcaaggctgccgacaaggtcgagcagtacgtgcacttcgtcggcggc
aagaacgacaagaccgagctcctgaagaagacgctgaccgccaatgccggtggccgggcg
atcgtcttcatgcgcaccaagcatacagccgagaagctgatgaagcatctcgaccaggtg
ggctattcggttgcctccatccacggcaacaagagccagggccagcgcgagcgggcactg
aagggtttccgtgacggggagatccagacgctgatcgcgaccgacgtcgctgcccgcggc
atcgacatccccgatgtcacccacgtcttcaactacgacctgccggaagtcccggatgcc
tatatccaccggattggtcgtacagcacgcgccggtcgcgacggcatcgcgatcgccttc
tgcacgtcagaagaaaccgggctgctgcgcgacatcgagaagctgatggggatcgagatc
gccacggcctccggcgagcgcccggaggggctcaatcgcccggcacgcggcaacaacaac
agccgcggcggtaatcgcggtcgcggcaacggccagccggccggtggtgaaggacgcccg
cagcagcgcaagcgtccggcccgcaagccgttcttccagtcggaaggcggcgaagggcgc
ggtgatggccaggagcggggcgcccagcctcaggccaaccgcccggcccgcaaggaccac
cgcaagggcaatgctccggcagctcacggtgcccacgaaagcgccaaccagcgcaaccgc
aacggccatggccgccccgcccagaaggccagcggcaatcccggtccggttcgcttcggc
ggcggcaacgaaggccgcaaccgccgtccggcctga
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