Rubrivivax gelatinosus: RGE_03200
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Entry
RGE_03200 CDS
T01803
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta RpoB
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RGE_03200 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rge03021
]
RGE_03200 (rpoB)
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_03200 (rpoB)
Enzymes [BR:
rge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RGE_03200 (rpoB)
Transcription machinery [BR:
rge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RGE_03200 (rpoB)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RGE_03200 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BAL93665
UniProt:
I0HKX8
LinkDB
All DBs
Position
336033..340154
Genome browser
AA seq
1373 aa
AA seq
DB search
MAQATPYTFTERKRIRKSFGKRENVLKVPYLLTMQSDSYVAFLQKDVPPQQRKPEGLQAA
FLSAFPIVSHNGFVEMKFLEYNIAKPPFDVRECQQRGLTFAAAVRAKLQMIIYDRESHPA
KVVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLL
FSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILSHFFVFDNFR
LMDSGAQMEFVPERLKGEIARFDLTDKNGAVIVEKDKRITARHVRQLEQTGTTFVSVPED
FLVGRVIARNMVDPDTGEIVAKANDEITETLLKKLRSAGIKDIQCLFTNELNQGAYISQP
LASDETADQLAARVAIYRMMRPGEPPTEDAVEALFHRLFYSEDTYDLSRVGRMKFNARVG
RDTPDGKMTLSNEDILDVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRSGLAR
IEKAVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETP
YRRVVDGKVTDQIDYLSAIEEGKYVIAQANATLDGEGRLIDELVSARENGESVLLSPERV
QYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPTLRPEKALVGTGVERVAAV
DSGTVVTARRGGIVDYVDTNRIVIRVNDDETVAGEVGVDIYNLIKYQRSNQNTNIHQRPI
VRRGDHVGAGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTS
IHIEELVVMARDTKLGSEEITRDIPNLSEQQLARLDESGIVYIGAEVNPGDVLVGKVTPK
GETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTSGTVIDVQVFTREGIQRDKRAQQIID
DELKRFRLDLNDQLRIVEADAFDRIEKLLAGRVANGGPQKIAKGTTITKEYLATVEKYHW
FDIRPAEDEVANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK
RRLQPGDKMAGRHGNKGVVSKIVAIEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHL
GWAGKGIGQRIGDMLQQQARAAELRELFDELYNKSGGKTESLQDLSDDEIVEMAKNLQHG
VPFATPVFDGAEEQEIRAMLKLAYPDELAARKGLTATRTQATLHDGRTGEAFERPVTVGY
MHVLKLHHLVDDKMHARSTGPCSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQE
MLTVKSDDVNGRTKVYENIVKGEHSIEAGMPESFNVLVKEIRSLGIDIELERD
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagcaaccccctacacgttcaccgagcgcaagcgcatccgcaagagcttcggc
aagcgcgagaacgtcctcaaggtcccctatctgctgacgatgcagagcgactcctacgtc
gccttcctgcaaaaggatgtgccgccgcagcagcgcaagcccgagggcctgcaggcggcc
ttcctgtcggcgttcccgatcgtctcccacaacggcttcgtggagatgaagttcctcgag
tacaacatcgcgaagccgccgttcgacgtgcgcgagtgccagcagcggggcctgaccttc
gccgcggccgtgcgcgcgaagctgcagatgatcatctacgaccgggagtcgcatcccgcc
aaggtcgtcaaggagatcaaggagcaggaggtctacatgggcgaagtgcccctgatgacc
gactacggctccttcatcgtcaacggcaccgagcgtgtcatcgtcagccagctgcaccgt
tcgccgggcgtgttcttcgagcacgacaagggcaagacgcacagctcgggcaagctgctg
ttcagcgcccgcatcatcccctaccgcggctcctggctggacttcgagttcgacccgaag
gacatcctgtacttccgcgtcgaccgtcgccgcaagatgccggtgacgatcctgctcaag
gccatcggcctgaaccccgagcagatcctcagccacttcttcgtcttcgacaacttccgc
ctgatggactcgggcgcgcagatggagttcgtgccggagcgtctgaagggcgagatcgcg
cgcttcgacctgaccgacaagaacggcgccgtcatcgtcgagaaggacaagcgcatcacc
gcgcgccacgtgcgccagctcgagcagaccggcaccacgttcgtcagcgttcccgaggac
ttcctcgtcggccgcgtcatcgcgcgcaacatggtcgacccggacaccggtgagatcgtc
gccaaggccaacgacgaaatcaccgagacgctgctgaagaagctgcgttcggcgggcatc
aaggacatccagtgcctgttcacgaacgagctgaaccagggcgcgtacatcagccagccg
ctggcctctgacgagaccgccgaccagctcgccgcccgcgtcgcgatctaccgcatgatg
cgccccggcgaaccgccgaccgaggacgccgtcgaagcgctgttccatcgcctgttctac
agcgaggacacctacgacctgtcgcgcgtcggccggatgaagttcaacgcccgcgtgggc
cgcgacacgccggacggcaagatgacgctgtccaacgaggacatcctcgacgtcgtcaag
atcctcgtcgacctgcgcaacggcaacggcgaagtcgacgacatcgaccacctgggcaac
cgtcgcgtgcgttgcgtcggcgaactggccgagaaccagtaccgctcgggcctcgcgcgc
atcgagaaggccgtcaaggaacgcctcggccaggccgagaccgaagccctgatgccgcat
gacctgatcaactccaagccgatcagcgcggcgctcaaggagttcttcggggcgagccag
ctctcgcagttcatggaccagaccaacccgctgtccgagatcacgcacaagcgtcgcgtc
tcggccctgggcccgggcggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtg
cacccgacccactacggccgcgtctgcccgatcgagacgccggaaggcccgaacatcggc
ctgatcaactcgctggcgctgtacgcgcagttgaacgagtacggcttcctggagacgccg
tatcgccgcgtcgtcgacggcaaggtcaccgaccagatcgactacctgtcggccatcgag
gaaggcaagtacgtcatcgcccaggccaacgcgacgctggacggcgaaggccgcctgatc
gacgaactggtctcggcgcgcgagaacggcgaatcggtgctgctgtcgccggaacgcgtg
cagtacatggacgtggcgccgacgcagatcgtctcggtcgcggcctcgctcgtgcccttc
ctcgagcacgatgacgcgaaccgcgcactgatgggcgccaacatgcagcgccaggccgtg
ccgacgctgcgtccggagaaggcgctggtcgggaccggtgtcgaacgcgtcgctgcggtc
gactcgggcaccgtggtcaccgcccgccgcggcggcatcgtggactacgtcgacaccaac
cgcatcgtcatccgcgtcaacgacgacgagacggtggccggtgaagtcggcgtcgacatc
tacaacctgatcaagtaccagcgttcgaaccagaacacgaacatccaccagcgcccgatc
gtgcgccgcggcgaccatgtcggcgccggcgacgtcgtcgccgacggtgcgtcgaccgac
ctgggcgagctcgcgctcggccagaacatgctggtcgcgttcatgccctggaacggctac
aacttcgaagactcgatcctgatcagcgagcgcgtcgtcgccgaagaccgctacacctcg
atccacatcgaggaactggtggtgatggcccgcgacaccaagctgggctccgaagaaatc
acgcgcgacatcccgaacctgagcgagcagcagctcgcccgcctggatgaatccggcatc
gtctacatcggcgccgaggtgaacccgggcgacgtgctggtcggcaaggtcacgcccaag
ggcgagacgacgctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcc
tccgacgtgaaggacacctcgctgcgtgtcgaccaaggcaccagcggcacggtcatcgac
gtgcaggtcttcacccgtgaaggcatccagcgcgacaagcgcgcccagcagatcatcgac
gacgagctcaagcgcttccgcctggacctgaacgaccagctgcgcatcgtcgaggccgac
gcgttcgaccggatcgagaagctgctggccggccgcgtcgccaacggcggcccgcagaag
atcgccaagggcacgaccatcaccaaggaatacctggcgacggtcgagaagtaccactgg
ttcgacatccgcccggccgaggacgaggtcgccaaccagctcgagtcgatcaagaactcg
ctcgagcagacgcgccacagcttcgacctcgcgttcgaagagaagcgcaagaagctgacg
caaggcgacgagctgcccgccggcgtgctgaagatggtgaaggtctacctcgccgtcaag
cgccgcctgcagcccggcgacaagatggccggccgccacggcaacaagggtgtcgtgtcc
aagatcgtcgcgatcgaggacatgccctacatggccgacggcacgccgtgcgacatcgtg
ctgaacccgctgggcgtgccctcgcggatgaacgtcgggcaggtgctcgaagtgcacctg
ggctgggccggcaagggcatcggccagcgcatcggcgacatgctgcagcagcaggcgcgt
gccgccgagctgcgtgaactcttcgacgagctctacaacaagtccggcggcaagaccgag
tcgctgcaggacctgagcgacgacgagatcgtcgagatggcgaagaacctgcagcacggc
gtgccgttcgcgacgccggtgttcgacggtgcggaggagcaggagatccgcgcgatgctc
aagctcgcctacccggacgagctggctgcgcgcaagggcctcaccgccacgcgcacccag
gccacgctgcacgacggccgcaccggcgaagccttcgagcgtccggtcaccgtcggctac
atgcacgtgctgaagctgcaccacctggtcgacgacaagatgcacgcccgctcgaccggc
ccgtgcagcctggtcacgcagcagccgctgggcggcaaggcgcagttcggtggccagcgc
ttcggtgaaatggaagtctgggcactcgaggcctacggcgccagctacatcctgcaggaa
atgctgacggtgaagtccgacgacgtgaacggtcggaccaaggtctacgagaacatcgtc
aagggcgagcactcgatcgaagccggcatgccggaatcgttcaacgtgctggtcaaggaa
attcgttcgctcggcatcgacatcgaactggaacgggattga
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