Rubrivivax gelatinosus: RGE_37530
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Entry
RGE_37530 CDS
T01803
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta chain RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RGE_37530 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_37530 (recB)
Enzymes [BR:
rge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RGE_37530 (recB)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RGE_37530 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BAL97092
UniProt:
I0HVQ5
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All DBs
Position
4006903..4010535
Genome browser
AA seq
1210 aa
AA seq
DB search
MTAVTARPLDVFACPLDGIALVEASAGTGKTWNLCGLFLRLLLERRLEVQQVLVVTFTNA
ATAELRERIRARLVDVLAALDGRPAALADPFVAGLLDALRRPELGLDDAEMRARVARALQ
TFDEAAIFTIHGFCQRALADAPFASAMPLRQELADDGALVREIVFDFWRRHVAADTLPAG
VAELLLSRGDTPEAWVELVRRRIAKPLARLVWPAVLDEPVAADTTALERAFDEARRLWRT
ERETVLAAVHEALPRLPANRYKPDSVATAARCWDEIAAAPSALLAPSDKLLDKGKAALLG
AAKLQPKKGLAPPAPHAFFEAADALLEALAAARAALEVERLRLVRRLLEDAPERLRALKR
ERRVLAFDDMLQNLHERLTGGACPQLAAALKARFPAALIDEFQDTDPLQWAIFEAVYGAG
DAPLFLIGDPKQAIYSFRNADLNTYLAARRSATASWTLAQNQRSSEPLLAALNGLFGHQP
RAFMLDGLDYQPVGYGAKPRAAFADRGAERAALELWSLPRDDEGQPLAKSVAMARAAEAC
AAEIARLVDAGRRGEATLAGRGLAAGDIAVLVRSHRQGARMRQALAALGVASVELSQASV
FASRDAEDLERLLGAVLEPANAARLRAALATEAMGFDAARIAALADDEAALAELVQRFAA
YRETWFTRGVAVMLRRWTQDEGVAARLLSRADGERRMTNWLHLAECLQRAAETTTSPEAL
QRWLHDERRAPGGDEEAQLRLESDRNLVQIVTIHKSKGLEYPVVFCPFVFDGHAGPTGGG
ESRELHDAAGRQLWVFGDAEVEPGSDERAKVEQAAETLRLLYVALTRAVHRLVLVVGPYA
VRQSAAESTKALLNWFVADGQEEPADWLKGKRTPEGLDAAWSAFAATHAQTVALRELPAA
PGTPLTAEAADPEAIVALPAPAVPPAWWIGSYSSLTQGLRHEGAAQDRDEAQRPARRAAP
AALAADDVLRFPRGAVAGECLHALFEHADFADAARWPEAAARALAAHPPEAEADAGRLAP
MLETLLADVLATRLPGGVVLGDVPPGRRLAELEFTLPAPALAADALAAVLREAGLPVPPL
AFGTLRGYLRGFIDLVFEHRGRCHVLDWKSNHLGWTAADYGPEPVAREVAAHGYQLQALL
YLVALHRWQRARRAGYDPERHLGGAMVLFVRGLRPGWRNADGSPAGVWAYKPSVALIERL
SALFDAVENA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgtcaccgcgcgtccgctggacgtcttcgcctgcccgctggacggcatcgcg
ctggtcgaggcttcggccggcaccggcaagacctggaacctctgcggcctgttcctgcgc
ctgctgctcgaacgccggctcgaggtacagcaggtgctggtcgtcaccttcaccaacgcc
gccaccgccgagctgcgcgagcgcatccgcgcccgtctggtcgacgtgctggccgcgctc
gacggccgcccggcggcgctggccgaccccttcgtcgccgggctgctggacgcgctgcgc
cggcccgagctcgggctggacgacgccgagatgcgcgcccgcgtagcccgcgcgctgcag
accttcgacgaagcggcgatcttcacgatccacggcttctgccagcgtgcgctggccgac
gcgcccttcgcctcggcgatgccgctgcgccaggaactggccgacgacggcgcgctggtg
cgcgagatcgtcttcgacttctggcgccgccacgtcgccgccgacacgctgccggcgggt
gtcgccgagctgctgctctcgcgcggcgacacgcccgaagcctgggtcgaactggtgcgc
cggcgcatcgccaaaccgctggcgcgcctggtgtggccggcggtgctggacgaaccggtg
gccgccgacacgacggcgctggaacgcgccttcgacgaggcccgccggctctggcgcacc
gagcgcgagaccgtgctcgccgccgtgcacgaggcgctgccgcggctgcccgccaaccgc
tacaagcccgacagcgtcgccaccgcggcgcgctgctgggacgagatcgccgccgcgccg
tcggcgctgctggcgccgtccgacaagctgctggacaaaggcaaggccgcgctgctgggc
gccgcgaagctgcaaccgaaaaaaggcctggcgccgccggcgccgcacgccttcttcgaa
gccgccgacgcgctgctcgaagcgctggccgcggcgcgcgccgcgctggaagtcgaacgc
ctgcgcctggtgcgccggctgctcgaagacgcgcccgaacggctgcgcgcgctgaagcgt
gaacgccgcgtgctggccttcgacgacatgctgcagaacctgcacgagcgcctgaccggc
ggcgcctgcccgcagctggccgcggcgctgaaggcgcgtttcccggcggcgctgatcgac
gagttccaggacaccgacccgctgcagtgggcgatcttcgaagccgtctacggcgccggc
gacgcgccactgttcctgatcggcgaccccaagcaggcgatctacagcttccgcaacgcc
gacctgaacacctatctcgcggcgcggcgcagcgccaccgcgagctggacgctggcgcag
aaccagcgttcgtccgagccgctgctggcggcgctgaacggcctcttcggccaccagccg
cgcgccttcatgctcgacgggctggactaccagccggtcggctacggcgccaagccgcgc
gcggccttcgccgaccgcggcgccgagcgcgccgcgctcgaactctggtcgctgccgcgc
gacgacgaaggccagccgctggccaagagcgtggcgatggcgcgtgccgccgaggcctgc
gccgccgagatcgcgcgcctggtcgacgccggccggcgcggcgaagcgacgctggccggc
cgtggcctggccgccggcgacatcgccgtgctggtgcgcagccaccgccagggcgcgcgc
atgcgccaggcactggcggcgctgggcgtggccagcgtcgagctgtcgcaggccagcgtc
ttcgccagccgcgacgccgaagacctggaacgcctgctcggtgcggtgctggagccggcc
aacgccgcgcgcctgcgcgccgcgctggccaccgaggcgatgggcttcgacgccgcacgc
atcgccgcgctggccgacgacgaggcggcgctggccgagctcgtgcagcgtttcgccgcc
taccgcgagacctggttcacgcgcggcgtcgcggtgatgctgcggcgctggacgcaggac
gaaggcgtcgccgcgcggctgctgtcgcgcgccgacggcgaacgccgcatgaccaactgg
ctgcacctcgccgaatgcctgcagcgcgccgccgagaccaccacctcgcccgaggccttg
caacgctggctgcacgacgagcgccgcgcgcccggcggcgacgaagaggcgcagctgcgc
ctggagtccgaccgcaacctggtgcagatcgtcaccatccacaagagcaagggcctggag
tacccggtcgtcttctgccccttcgtcttcgacggccacgccgggccgaccggcggcggc
gagagccgcgagctgcacgacgccgccggccggcagctctgggtcttcggcgacgccgag
gtcgagcccggcagcgacgaacgcgccaaggtcgagcaggccgccgagacgctgcgcctg
ctctacgtcgcgctgacgcgtgcggtgcaccgtttggtgctggtggtcgggccttacgcg
gtgcgccagtcggccgcagagagcacgaaggcgttgctgaactggttcgtcgccgacggc
caggaagagcccgccgactggctgaaaggcaagcgcacgcccgaggggctggacgccgcc
tggtcggcctttgccgccacgcacgcgcagaccgtcgcgctgcgtgaactgcccgccgcg
ccgggcacgccgctgacggccgaggccgccgaccccgaggccatcgtcgcgctgccggcg
ccggccgtgccgccggcctggtggatcggcagctacagcagcctgacccagggcctgcgc
cacgaaggcgccgcccaggaccgcgacgaggcccagcgcccggcgcgccgtgccgcgccg
gcggcgctggcggccgacgacgtgctgcgtttcccgcggggcgcggtggccggcgaatgc
ctgcacgcgctgttcgagcacgccgacttcgccgacgccgcacgctggcccgaggccgcg
gcgcgtgcgctggccgcgcacccgcccgaagccgaggccgacgccggccggctggcgccg
atgctggagacgctgctcgccgacgtgctggcgacgcggctgccgggcggcgtcgtgctc
ggcgacgtgccgccgggcagacgcctggccgagctggagttcacgctgccggcgcccgcg
ctggccgccgacgcgctggcggccgtgctgcgcgaagccggcctgccggtgccgccgttg
gctttcggcacgctgcgcggttatctgcgcggcttcatcgacctggtcttcgagcaccgc
ggccgctgccacgtgctcgactggaagtccaaccacctgggctggaccgccgccgactac
ggccccgagccggtggcacgcgaggtcgccgcgcacggctaccagctgcaggcgctgctc
tacctggtcgcgctgcaccgctggcagcgtgcgcgccgcgccggctacgaccccgagcgc
cacctcggcggcgcgatggtgctgttcgtgcgcggcctgcgcccgggctggcgcaacgcc
gacggcagccctgccggcgtctgggcctacaaacccagcgtcgcgctgatcgagcgcctg
tcggcgctgttcgacgccgtggagaacgcctga
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