Rhodanobacter glycinis: CS053_05910
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Entry
CS053_05910 CDS
T06136
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rgl
Rhodanobacter glycinis
Pathway
rgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CS053_05910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rgl03019
]
CS053_05910
03009 Ribosome biogenesis [BR:
rgl03009
]
CS053_05910
Enzymes [BR:
rgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CS053_05910
Messenger RNA biogenesis [BR:
rgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CS053_05910
Ribosome biogenesis [BR:
rgl03009
]
Prokaryotic type
rRNA helicases
CS053_05910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
adh_short
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QEE24085
UniProt:
A0A5B9DZF6
LinkDB
All DBs
Position
complement(1419177..1421039)
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AA seq
620 aa
AA seq
DB search
MSAPSSDSAPASAGFGALALSPEVMRALTDVGYESPSPIQAATIPPLLEGRDVLGQAQTG
TGKTAAFALPILSRIDLKPGKPQALVLAPTRELAIQVAEAFQRYAAHMPGLQVLPIYGGQ
SYGPQLHALRRGVQVVVGTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKV
LQATPPERQVALFSATMPTVIRKIAQKHLKDPVEITIKAATTTAANIRQRYWFVSGLHKL
DAMTRILEAEPFDAMIIFARTKQATEELAEKLSARGLAAAAINGDIAQPQRERVIQQLKD
GKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPRE
KGMLHAIERATRQRIEEMKLPTVEAVNNVRISRFKQNISDTLAVGDLAFFQQLIEQYEQE
HNVPAIEIAAALARISQGDRPLLLTAPPPREYAPRTNDGNSRPPRQRDDNKRPSHDRPPQ
RERPSAHEHVHRPHATEAGKTTYRIEVGHDHGVKPGNIVGAIANEAGLDSQFIGRLSIRG
DYSLVDLPEGMPAEVFEHLKKVWVARQQLRIHPWDGKDTDEGTSAPARAQGGFRKPGGFK
PGARKPHARDNGGGKPPRRK
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccccttcctccgactccgccccggcctccgccggctttggcgcgcttgccctt
tccccggaggtaatgcgcgcactgaccgacgtcggctacgaatccccatcgccgatccag
gccgccaccatcccgccgctgctggaaggccgcgacgtgctgggtcaggcacagaccggc
accggcaagaccgccgcgttcgcgctaccgatcctgtcacgcatcgacctcaagcccggc
aagccgcaggcgctggtgctggcgcccacacgcgaactggccatccaggtggccgaggcg
ttccagcgttacgccgcgcacatgccggggctgcaggtgctgccgatctacggtggccag
agctatggcccccagctgcatgcgctgcgccgtggcgtgcaggtcgtggtgggtacgccg
ggccgggtgatcgatcacctggacaagggcacgctggatctctccgaactgaagtacctg
gtgctcgacgaggccgacgagatgctgcgcatgggcttcatcgacgacgtcgagaaggtg
ctgcaggcgacgccgcccgagcgccaggtggccctgttctccgccaccatgccgacggtg
atccgcaagatcgcgcagaagcacctgaaggacccggtcgagatcaccatcaaggccgcc
accaccaccgccgccaacatccgccagcgctactggtttgtcagcgggctgcacaagctc
gacgcgatgacacgcatcctggaggccgaaccgttcgacgcgatgatcatcttcgcgcgc
accaagcaggccaccgaggaactggccgaaaagctgtccgcgcgcggcttggccgccgcc
gcgatcaacggcgacatcgcccagccgcagcgcgagcgggtgatccagcagctcaaggac
ggcaagctcgacatcctggtcgccaccgacgtggccgcgcgcggcctcgacgtggagcgc
atcagccacgtgctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatc
ggccgtaccggccgcgcgggccgcagcggcgaggcgatcctgttcgtcacgccgcgcgaa
aaaggcatgctgcacgccatcgaacgcgccacccgccagcgcatcgaagagatgaaactg
cccaccgtcgaagcggtgaacaacgtgcgcatcagccgtttcaagcagaacatcagcgat
acgctggcggtcggcgacctggcgtttttccagcagctgatcgagcagtacgagcaggag
cacaacgtgccggcgatcgagatcgccgccgcgctggcacgcatctcccagggcgatcgt
ccgctgctgctcaccgcgccgccgccgcgcgaatacgcaccgcgcacgaatgatggcaac
agccgtccgccgcgccagcgtgacgacaacaagcgcccctcgcatgatcgtccgccccag
cgcgagcgtccgtccgcgcacgagcatgtgcaccgcccccacgcgaccgaggcaggcaag
accacctaccgcatcgaagtcggtcacgatcacggcgtgaagccgggcaacatcgtcggc
gccatcgccaacgaagccgggctcgacagccagttcatcggtcgcctcagcatccgcggc
gactacagcctggtcgacctgcccgaaggcatgcccgcggaagtgttcgagcacctgaag
aaggtctgggtggcgcgccagcagttgcgcatccacccgtgggacggcaaggacaccgac
gaggggaccagcgcgccagcgcgcgcgcagggcggcttccgcaagcccggcgggttcaag
cccggcgcacgcaaaccgcatgcccgcgacaacggtggcggcaagccgccgcgacgcaaa
tag
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