KEGG   Rhodococcus jostii: RHA1_ro05048Help
Entry
RHA1_ro05048      CDS       T00382                                 

Definition
(GenBank) DNA ligase (ATP)
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rha  Rhodococcus jostii
Pathway
rha03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RHA1_ro05048
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rha03400]
    RHA1_ro05048
Enzymes [BR:rha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RHA1_ro05048
DNA repair and recombination proteins [BR:rha03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RHA1_ro05048
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ABG96829
UniProt: Q0S6K7
LinkDB All DBs
Position
5336375..5338675
Genome map
AA seq 766 aa AA seqDB search
MYRRREARVATAGTRQLTVDGHRLSLTNLGKVLYPESETTKGEVIDYYTRIAPAMLPHVV
DRPATRKRWPNGVDSEPFFEKNLAASAPAWLERRALEHSDRSVHYPLLNSVAALAWAGQQ
AALELHVPQWRFDGPHRGPATRIVFDLDPGPGVGLVECAEVARAVRDLVANLGWTAYPVT
SGSKGIHLYVPLDRKLDGSGASTVAKQVATGLEKLRPELVTATMAKAVRAGKVFVDWSQN
NPSKTTIAPYSLRGRAQPYVAAPRSWDELDDPDLRQLRFEEVLERWESDGDLLAGLDPPI
ENDATLAEYRRKRDPGRTPEPMPDTVQPGEGNSFVIQEHHARRLHYDLRLEREGVLVSWA
VPKNVPTTTGENRLAVHTEDHPLEYLTFSGTIPKGEYGGGEMAIWDTGTYDTEKWRDDEV
IVQLHGEQVEGRFALIRTKGDQWLMHLMKDQTPGGSHTSELPRGLSPMLASPGTLDGLDA
DEWAFEGKWDGIRVIAEISGGELKLTSRAGNDKTRDYARLGWLADALGDHEVVLDGEVVA
FDERGVANFGLLQQGNEPHFLAFDVLYLDGVSLLRKKYTDRRRVLEALAAKVDDLVVPPQ
LHGSAQDALDESRGKGWEGVVAKRRESVYLPGKRGSSWIKVKNWRTQEAVIGGWRRGQGG
RSTGIGSVLLGVPEDGGLRYIGRVGTGFTERDLQELASTLGPLETDTSPFVEDLPTADRK
GAVWVTPTLVAEVRFMDWTGSKRLRHPSWRGLRDDKAPEDVEVEVS
NT seq 2301 nt NT seq  +upstreamnt  +downstreamnt
atgtatcggcggagggaggcgcgcgtggccactgcgggaacccggcaactgacggtcgac
ggacatcgcctgtccctgaccaatctcggcaaggtcctctacccggaatcggaaacgacg
aagggcgaggtcatcgactattacacgcggatcgcccccgccatgctcccgcacgtcgtc
gaccgccccgccacccgtaaacgctggcccaacggggtggacagcgagccgttcttcgag
aagaacctcgcggcctccgcaccggcgtggttggagcgccgtgcactcgagcactcggat
cggtcggtgcactatccgctcctgaactcggtcgcggccctggcgtgggcggggcagcag
gccgcactcgaactgcacgtgccgcagtggcggttcgacggaccacatcggggtcccgcc
acccggatcgtcttcgacctcgaccccggtcccggtgtgggcctggtcgaatgcgcggag
gtggcacgggccgtgcgcgacctggtcgcgaacctcggctggaccgcgtacccggtcacc
agcggcagcaagggtattcatctgtacgtgccgctcgaccggaagctggacggttcgggc
gcgtcgaccgtcgcgaagcaggtggcgacgggactggagaagctgcggcccgaactcgtc
accgccaccatggccaaggcggtgcgcgcgggaaaggtcttcgtcgactggagccagaac
aatccgtccaagaccaccatcgcgccgtattcgctgcgggggcgcgcccagccgtatgtc
gcggcgccgcggagctgggacgaactcgacgaccccgacctacggcagctgcggttcgag
gaagtgctcgaacggtgggagtcggacggcgacctgctcgccggactcgatccgccgatc
gagaacgacgccaccctcgccgagtaccgccgcaagcgtgatcccggacggacacccgag
ccgatgccggacacggtgcagccaggggagggcaacagcttcgtcatccaggaacatcac
gcccggcgtctccactacgatctgcggctcgaacgcgagggggtgctcgtgtcgtgggcg
gtgccgaagaacgtgccgacgacgacgggggagaaccggctcgcggtgcacaccgaggat
cacccgctcgaatacctcacgttctccgggaccatcccgaagggcgagtacggcggcggc
gagatggccatctgggacacgggaacgtatgacaccgagaagtggcgggacgacgaggtg
atcgtccagttgcacggcgagcaggtggagggccggttcgcgctgatccgcacgaagggc
gaccagtggctgatgcatctgatgaaggatcagaccccgggtgggtcgcacacgtccgaa
ctgccgcggggactgtcgccgatgctcgcgagccccggcaccctcgacggactggacgcc
gacgagtgggcgttcgaaggaaagtgggacgggatcagggtgatcgccgagatcagtggc
ggcgagctgaagctgacgagccgggcgggcaacgacaagacccgcgactacgcccgattg
ggttggctggcagacgctctcggcgaccacgaggtggtcctcgacggtgaagtggtcgcg
ttcgacgagcggggtgtcgcgaacttcggcctcctgcagcagggcaacgagccgcacttc
ctcgcgttcgacgtgctgtatctcgacggagtgtcgttgttacgcaagaagtacaccgac
cggcgccgcgtcctcgaagccctggcggccaaggtggacgacctggtcgttccgccgcaa
ctgcacgggtccgcgcaggacgctctggacgagagccgcggcaagggctgggaaggtgtc
gtggccaaacgccgcgagtcagtgtacttgccgggcaagcgggggtcgagctggatcaag
gtgaagaactggcgcacacaggaagccgtgatcggcgggtggcgccggggtcagggcggg
cggtccacgggaatcgggtcggtcctgctcggcgttcccgaggacggtgggctgcgctac
atcgggcgcgtcggaaccggcttcaccgaacgggatctgcaggaactcgcatctaccctg
gggccgctggaaacagacaccagtccgttcgtcgaagacctgcccaccgccgaccgcaag
ggggccgtgtgggtcaccccgacactggtggcggaggtgcggttcatggattggaccggc
tcgaagagactgcggcaccccagctggcgtgggctcagggacgacaaggcacccgaggac
gtcgaagtggaggtctcgtga

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