Rhodococcus sp. PBTS 1: A3Q40_01240
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Entry
A3Q40_01240 CDS
T05182
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhu
Rhodococcus sp. PBTS 1
Pathway
rhu03030
DNA replication
rhu03430
Mismatch repair
rhu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3Q40_01240 (dnaE1)
03430 Mismatch repair
A3Q40_01240 (dnaE1)
03440 Homologous recombination
A3Q40_01240 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhu03032
]
A3Q40_01240 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rhu03400
]
A3Q40_01240 (dnaE1)
Enzymes [BR:
rhu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A3Q40_01240 (dnaE1)
DNA replication proteins [BR:
rhu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
A3Q40_01240 (dnaE1)
DNA repair and recombination proteins [BR:
rhu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
A3Q40_01240 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AMY18633
UniProt:
A0A143Q5U1
LinkDB
All DBs
Position
1346933..1350466
Genome browser
AA seq
1177 aa
AA seq
DB search
MSDFVHLHNHTEYSMLDGAAKIAPLFAEAQRLGMSAVGMTDHGNMYGASEFYNEAKKAGI
KPIIGIEAYIAPESRFDKKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS
LASIEGQLGKWARMDEELIATHAEGIIATTGCPSGEIQTRLRLGHEREALEAAAKWQEIW
GPDNFFLELMDHGLSIERRVREGLLRIGEQLGIPPLATNDCHYVTKDASTNHEALLCIQT
GKTLSDPTRFKFDGDGYYLKSAEEMRALWDSEVPGACDSTLLIAERVQSYDEVWEHRDRM
PIFPVPEGETQGSFLTKEVERGLEWRFPDGVPQEYRDRAKYEIAVILEMGFPAYFLVVGD
LIKHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPLPHGLLFERFLNPERVSMPDIDIDF
DDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKALP
PPIMAKDISVAGITDPTHERYKEAAEVRSLIESNPDVAKIYDTARGLEGLIRNAGVHACA
VIMSSEPLTDAIPVWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIDNIKA
NRGIELDLDTLGLDDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLALY
RPGPMGMNAHNDYADRKNGRQQVTPIHPELEEPLAEILKDTYGLIVYQEQIMQIAQKVAG
YSLGQADILRRAMGKKKLSVLEEAYAGFREGMLGNNFSEPAIKALWDTILPFAGYAFNKS
HAAGYGLVSYWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVNES
EQNFASVGEDIRFGMGAVRNVGANVVSSIIAARTEKGKFTDFSDYLAKIDATACNKKVTE
SLVKAGGFDSLGHPRKGLVLVHADAIDSVLGTKKAEAIGQFDLFGGVDADESVTSVFNVK
IPDEEWDTKHRLALEREMLGLYVSGHPLNGVEHVLAAQSDTAIPTILEGGLKDGTQVTVG
GILASVNRRVNKNGLTWASAQLEDLSGGIEVLFFPQAYSVFGADVAEDSVVLVKARVSAR
DDRISLIANDLAVPDLSAVGVAKPLAVSLPTRLCTADKVGALKRVLASHPGTSDVHLRLL
SGDRVTVLKVDEKLRVTPSSALMGDLKALLGPGCLTV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggacttcgttcatctccacaatcacaccgagtactccatgctggacggcgccgcg
aagatcgcgccgctgttcgcggaggcgcagcgcctcgggatgagcgcggtgggaatgacc
gaccacggcaacatgtacggggccagcgagttctacaacgaggccaagaaggccggcatc
aagccgatcatcgggatcgaggcgtacatcgcgccggagtcgcgcttcgacaagaagcgc
gtgctgtggggcgatcgcagtcagaagtcggacgacgtgtcgggcagcggtgcgtacacg
cacatgaccatggtcgcggagaacgccaccggtctgcggaacctgttcaaactgtcgtcg
ctcgcgtccatcgaggggcagctgggcaagtgggcgcgcatggacgaggagctcatcgcc
acccatgccgagggcatcatcgcgaccaccggatgcccgtccggcgagatccagacccgc
ctgcgcctcgggcacgagcgggaggcgctcgaggccgcggccaagtggcaggagatctgg
ggtccggacaatttcttcctcgagctgatggaccacgggctgtccatcgagcggcgcgtg
cgggagggcctgctgcgcatcggcgagcagctcggcatccccccgctcgcgaccaacgac
tgccattacgtcaccaaggacgcctccaccaatcacgaagcgttgctgtgcatccagacc
ggcaagacgctctcggatcccacgcgcttcaagttcgacggggacggctactacctcaag
tcggccgaggagatgcgcgcgctgtgggactcggaggtgcccggtgcgtgcgattcgact
ctgctgatcgccgagcgggtgcagtcctacgacgaggtgtgggagcaccgggaccgcatg
ccgatcttcccggtgccagagggggagacccagggctccttcctgaccaaggaggtcgag
cgcggcctcgagtggcgtttccccgacggggtgccgcaggaataccgggatcgcgcgaag
tacgagatcgccgtcatcctcgagatgggcttcccggcctacttcctcgtggtcggtgac
ctcatcaagcacgcgcgcgaggtcggcatccgcgtcggaccgggtcgtggatcggccgcc
gggtccctcgtggcctacgcgatgggcatcaccaacatcgacccgctcccgcacgggctg
ctcttcgagcgcttcctgaaccccgagcgcgtgtcgatgcccgacatcgacatcgacttc
gacgatcgccgccgcggggagatggtgcgctacgccaccgagaagtggggcagcgaccgg
gtggcgcaggtgatcaccttcggcaccatcaagaccaaggcggccatcaaggactccgcc
cgcgtgcagttcggccagcccggtttcgccatcgccgaccagatcaccaaggctctgccg
ccgcccatcatggccaaggacatctcggtcgccggcatcaccgaccccacgcacgagcgg
tacaaggaagccgccgaggtccgctcgctcatcgagtccaacccggacgtcgccaagatc
tacgacaccgcccgcggcctcgaggggctgatccgtaacgccggcgtccacgcctgcgcg
gtcatcatgtcctccgagccgctcaccgacgccattccggtgtggaagcgtccgcaggac
ggcgccatcatcaccgggtgggactacccgtcctgcgaggccatcggcctgctcaagatg
gacttcctgggcctgcgcaacctcacggtcatcggggacgcgatcgacaacatcaaggcc
aatcgcgggatcgagctggacctcgacacgctcggcctcgacgatcctgcgacgtacgaa
ttgctcgcccgcggtgacaccctcggcgtgttccagctcgacggcagcgccatgcgcgac
ctgctccgccggatgcagcccaccggcttcgaggacatcgtggcggtcctcgcgctgtac
cgcccgggtccgatgggcatgaacgcgcacaacgactacgccgatcgcaagaacggacgc
cagcaggtcaccccgatccaccccgagctcgaggaaccactcgcggagatcctgaaggac
acctacgggctcatcgtgtaccaggagcagatcatgcagatcgctcagaaggtcgcgggg
tactcgctggggcaggccgacatcctccgccgcgcgatgggcaagaagaagctctcggtg
ctcgaggaggcctacgcgggattccgagaaggcatgctgggcaacaacttctccgaaccc
gccatcaaggccctctgggacaccatcctcccgttcgcgggctacgcgttcaacaagtcg
cacgccgcgggatacgggctcgtctcgtactggaccggctatctcaaggccaactacccg
gcggagtacatggcgggtctgctcacgtccgtcggcgacgacaaggacaaggccgcggtc
tacctggccgactgccgcaagctcgggatcaccgtgctgccgcccgacgtcaacgagtcc
gagcagaacttcgcgtcggtgggggaggacatccgattcggcatgggcgcggtgcgcaac
gtcggggccaacgtggtgtcgtcgatcatcgcggcgcgcacggagaaggggaagttcacc
gacttctccgactacctggcgaagatcgatgccaccgcgtgcaacaagaaggtcaccgaa
tctctcgtcaaggccggcggtttcgactcgctcggccaccctcgcaagggtctggtactg
gtgcatgccgacgcgatcgactccgtcctgggcaccaagaaggccgaagccatcggccag
ttcgacctgttcggcggggtcgacgccgacgagtccgtcaccagcgtgttcaacgtcaag
atcccggacgaggagtgggacaccaagcaccgcctggccctcgagcgagagatgctgggg
ctctacgtctccggacatccgctgaacggggtcgagcacgtgctggccgcgcagtccgac
acggcgatccccacgattctcgagggtgggctcaaggacggcacgcaggtcaccgtcggc
ggcatcctggcctcggtgaatcgtcgtgtgaacaagaacggcctgacgtgggcgtcggca
caactcgaagatctctccggcggtatcgaggtgctgttcttcccgcaggcgtactcggtg
ttcggcgccgacgtcgccgaggactccgtggtcctggtcaaggcgcgcgtctccgcgcgt
gacgatcgcatctcgctcatcgccaacgatctcgccgtaccggatctctccgcggtgggc
gtcgccaagcccctcgcggtcagtctgcccacccggctctgcacggccgacaaggtcggc
gcgctcaagcgggtgctggccagccatcccgggacgtccgacgttcacctgcggttgttg
agcggagaccgggtgacggtactcaaggtggacgagaagctgcgggtgacgccgtcctcg
gcgctcatgggggacctcaaggcgttgctgggaccgggctgtctcacggtctga
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integrated database retrieval system
