Rhodococcus sp. PBTS 1: A3Q40_01485
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Entry
A3Q40_01485 CDS
T05182
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rhu
Rhodococcus sp. PBTS 1
Brite
KEGG Orthology (KO) [BR:
rhu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhu03019
]
A3Q40_01485
Enzymes [BR:
rhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A3Q40_01485
Messenger RNA biogenesis [BR:
rhu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A3Q40_01485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
AAA_30
SLFN-g3_helicase
NACHT
T2SSE
AAA_16
TsaE
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMY18875
UniProt:
A0A143Q6K1
LinkDB
All DBs
Position
complement(1607121..1611047)
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AA seq
1308 aa
AA seq
DB search
MSTPASTSPTRSDLTARLAGLTHTDAHRLGRRLGRSRRPEDLAKISADIDRAEVRVRNRR
AAVPALEYPEFLPVTARREDIAAAIAETQVVIVAGETGSGKTTQIPKICLELGRGVLGTI
GHTQPRRLAARTVAERIAEELGQEIGEAVGYTVRFTDRSSDDTLIKLMTDGILLAEIQRD
RMLRRYDTIIIDEAHERSLNIDFLLGYLARLLPQRPELKVIVTSATIDPERFARHFAVDG
EDAPIVEVSGRTFPVEMRYRPLTVDRDDETVDRDPVDATCDAVDELLREPEGDILVFLSG
EREIRDTADALKDRRLRGVEVLPLYARLSAAEQHRVFERHSGRRIVLATNVAETSLTVPG
IRYVVDPGTARISRYSLRTKVQRLPIEPISKASARQRAGRCGRVADGICIRLYSEEDFDA
RPDFTDPEILRTNLASVILQMASLGLGAVEKFPFVEPPDPRSVRDGLGLLTELGALDTTP
HSGEHDGPRLTALGRELAGLPVDPRMARMLVEAHRSGCLPEMLVIVAALSIQDVRERPAE
HQQAADEMHRRFAVEGSDFLALRELWTYLGEQRRALSSNQFRRLCRTEFLHYLRIREWQD
LHGQLRQIARGMGWTVPDHDAHTPASDATIHQALLSGLLSHIGLREGDKRDFLGARGSTF
AIFPGSSLSKKPPRWVMAAELVETSRLWARMAARIEPEWAEKLAPHLLKRQYSEPHWSTK
REAAVAYERVTLYGVPLVAKRPVSYGSIDAEVSRDLFLRHALVQGEWRTHHRFFHHNQQL
RSDAEELESRARRRDIVVDDDALYAFYDERVPADVVSARHFDRWWKKASRATPDLLDFDR
ATVVTPAAAAVTGGDFPDAWRQGERQFPLTYQFEPGRDDDGVTVHIPVDQLPQVADVGFD
WLVPGMRLDLVTALIKTLPKDLRRTVVPAPDHAAAAVAAMRPRTEPLTTALSRELTRMGG
VPIAAEDFSPDALPRHLRMTFRIVDGTTELGRGPSLSALKARLGRAAATAVSAAAKDTEK
GPVRRWTSETIGTLEPTVTRTVQGRAVTGYPALVAESGGVAVRVLGSAAEQRAAMREGTR
RLLLDAIPVSTKSLLAGRSPAARLHLGQNPHGSIEALLDDCRALAVDDLMSAHGGPVSSP
DAFAALESAVRRDLASRTAAVLRLVEPVLAAATAVRLALEESSGDPAEDVRAQLDALIFP
GFVFETGTAHLPHLPRYLEAARRRLDALPSSATRDAAGMDALDRVYAAYDALLQSLPSAR
RSGDDVREIAWMIEELRVNLFAQALGTAYPVSEKRVLKAIDAVRTARR
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacacctgcctccacctcccccacgcgcagtgacctcaccgcgcgcctcgccgga
ctcactcacaccgacgcccaccgactcggccggcgtctcggacgcagtcggcgtcccgag
gacctcgcgaagatctccgccgacatcgatcgcgccgaggtgcgggtgcggaatcggcgt
gcggccgtcccggcgctcgagtacccggagttcctcccggtcacggcccggcgcgaggac
atcgccgccgccatcgccgagacccaggtggtgatcgtcgccggcgagaccggctccggc
aagaccacgcagattcccaagatctgcctggagctgggccgcggcgtgctcggcaccatc
ggccacacgcagccgcgtcggctcgccgcccggacggtcgccgagcggatcgcggaggaa
ctgggccaggagatcggcgaggccgtcggctacacggtccggttcacggatcgctcgagc
gacgacacgctgatcaagctcatgacggacggcatcctgctcgcggagatccagcgcgac
cgcatgctgcgtcgatacgacaccatcatcatcgacgaggcgcacgaacgcagcctgaac
atcgacttcctcctgggctacctggctcgcctgcttccgcagcgccccgagctcaaggtg
atcgtgacgtcggcgaccatcgatccggagcggtttgcccgtcacttcgccgtcgacggc
gaagacgcgcccatcgtcgaggtctccgggcgcaccttccccgtcgagatgcgctaccgc
cccctcaccgtggaccgcgacgacgagaccgtcgatcgcgatccggtcgacgccacgtgc
gacgccgtcgacgagctgctccgcgagcccgagggcgacatcctcgtcttcctctccggt
gagcgggagatccgcgacactgccgacgcgttgaaggaccgtcgcctgcggggcgtggag
gttcttcccctctacgcccgattgtcggccgccgagcagcatcgcgtgttcgagcgacac
tccggtcgacgcatcgtcctggccaccaacgtcgccgagacgtcactgaccgtccccggc
atccgctacgtcgtcgaccccggcaccgcgcgcatctcccgttattcgctgcgcaccaaa
gtgcagcggctccccatcgagccgatctcgaaggcctcggcccgccagcgcgcaggacgc
tgcggccgcgtcgccgacggcatctgcatccggctgtactcggaagaagacttcgacgcg
cgtccggacttcaccgatccggagatcctgcgcaccaacctggcgtcggtcatcctgcag
atggcctcgctcggcctcggggcggtggagaaattcccgttcgtcgaaccgcccgatcca
cgcagcgtccgcgacggactcggactgctcaccgaactcggcgccctggacaccaccccg
cactccggggagcacgacgggccccgcctcaccgccctcggacgtgaactcgccggcctc
ccggtcgatccgcggatggcgcgcatgctggtggaagcccaccgctccgggtgcctgccg
gaaatgctggtcatcgtggcggcgctgtccatccaggacgtgcgcgagcgtcctgccgag
caccagcaggcggccgacgagatgcaccggcgcttcgcggtcgaggggtcggacttcctc
gccctccgggaactctggacctacctcggcgagcagcgacgggcgttgtcctccaaccag
ttccggcggctgtgtcgcaccgagttcctgcactacctgcgcattcgcgagtggcaggac
ctgcacggccagctccggcagatcgcccgcggcatggggtggaccgtgcccgatcacgac
gcgcacaccccggcgtcggacgccacgatccatcaggcgctgctgtcgggcctgttgtcg
cacatcggattacgggagggcgacaagcgcgacttcctcggggcacgcggctcgaccttc
gcgatcttccccggctcgtcgctgtcgaagaagccaccgcggtgggtgatggcggccgag
ctggtggagaccagccggctctgggcgcgcatggccgcgcgcatcgagcccgagtgggcg
gagaaactcgccccccacctgctcaagcggcagtactccgaaccgcactggtcaaccaaa
cgcgaagccgccgtcgcctacgagcgggtgacgctctacggcgtaccgctggtggccaag
cggccggtgtcctacgggtcgatcgacgcggaggtctctcgcgacctgttcctgcgtcac
gccctggtccagggcgagtggcgcacgcaccaccgcttcttccaccataaccagcaatta
cgtagcgacgccgaggaattggagtcgcgtgcccgacgccgcgacatcgtggtcgacgac
gacgccctgtacgcgttctacgacgagcgcgtgcccgccgacgtggtctcggcgcgtcac
ttcgatcggtggtggaagaaggcgtcccgcgcgacgccggacctgctcgacttcgaccgc
gcgaccgtcgtcactccggctgccgccgcggtcaccggcggcgacttccccgacgcgtgg
cgccagggcgagcggcagttcccgttgacctatcagttcgagccgggccgagacgacgac
ggcgtgaccgtccacatcccggtcgaccagttgccgcaggtcgccgacgtcggcttcgac
tggctggtccccggcatgcgcctcgatctcgtcaccgcactgatcaagacgctgccgaag
gacctgcgccgcaccgtggttcccgcgcccgatcacgccgcggccgccgtcgccgccatg
cgacctcgcaccgaaccgctcacgacggcgctctcgcgcgagctcacccgcatgggtggt
gtcccgatcgcggccgaggacttctcccccgacgcgctgccccggcacctgcgcatgacg
ttccggatcgtcgacggcaccaccgagctgggtcgcggaccgtcgttgtcggcgttgaag
gccaggctgggacgcgccgcggccaccgccgtgtcggcggcggccaaggacaccgaaaag
ggccccgtccgccggtggacgtccgagacgatcggcactctcgagccgacggtgacccgc
accgtgcagggccgcgccgtcaccggctacccggcgctggtggccgagagcggtggtgtg
gccgtccgcgtgctcgggtcggcggccgaacagcgtgcggccatgcgggaggggacgcgg
cggctgctgctcgacgcgatcccggtctcgacaaagtccctcctggccggtcgctcaccg
gcggcgcggctgcacctcggccagaacccgcacggcagcatcgaggccctgctcgacgac
tgtcgcgcgttggccgtcgacgatctgatgtccgcgcacggcggtcccgtgtcctcgccg
gacgcgttcgccgccctcgagtcggccgtccgccgtgacctcgcgtcacggacggccgcg
gtcctgcggctggtcgaacccgtcctcgcggcggccacagcggtccgactggcactcgag
gaatcgagcggcgaccctgccgaggacgtgcgggcgcaactggacgccctgatcttccct
ggcttcgtcttcgagacgggcacggcgcacctgccccatctgccgcgctacctcgaggct
gcgcggcgtcggctggacgcgttgccgtcgagcgcgacccgagacgctgcgggtatggac
gccctcgatcgtgtctacgccgcgtacgacgcacttctccaaagcctgccgtcggcccgc
cgatccggtgacgacgtgcgggagatcgcgtggatgatcgaggaactgcgggtcaacctg
ttcgcgcaggccctcggcactgcctacccggtgtccgagaaacgggtcctgaaagcaatc
gacgccgtgcgcacggcgcggcgctga
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