Rhizobium sp. S41: BA939_02595
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Entry
BA939_02595 CDS
T05451
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhv
Rhizobium sp. S41
Pathway
rhv03410
Base excision repair
rhv03430
Mismatch repair
rhv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BA939_02595
03430 Mismatch repair
BA939_02595
03440 Homologous recombination
BA939_02595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhv03400
]
BA939_02595
DNA repair and recombination proteins [BR:
rhv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BA939_02595
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BA939_02595
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BA939_02595
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ANV22931
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Position
1:complement(517402..519204)
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AA seq
600 aa
AA seq
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MMEPADTVARAFLSVERSATEQRWVSRLDQAGQNRALAMSQVHGIPELIARVLAGRGVGV
DDALAFLDPTIRSLMPDPHVLTDCEKAAERLVRAIEAGEKVAIFGDYDVDGAASSALMYR
FLAHFGLTPEIYIPDRIFEGYGPNPAAMQQLAANGATLIVTVDCGSTSHESLKAAKEART
DVVVIDHHQVGTELPPAVALVNPNREDDLSGQGHLCAAGVVFLVLVATLRVLKDRRHRQA
FTLDLLSLLDIVALATVCDVVPLKGLNRAYVVKGLIAARHMKNAGLAALFKKAGLGGPVT
PYHFGFLIGPRINAGGRIGDAALGSRLLTIDDSSQAEVIAERLDELNRERQAMEAAMLAE
AEAEALFEYGDGSGAGVIVTARENWHPGIVGLLASRLKDRFRRPAFAIAFDPSGKGTGSG
RSIAGFDMGRMVRAAVEAGLLVKGGGHAMAAGLTVERANLGKLRTFFEEAAAKTVNELVE
SSVLKIDGAIGASGATLQLVDQLEQAGPYGSGHSQPIFAVPAHRLRDVRLVGTSHVKITL
EAMDGSRLDGIAFRAAEAPLGQMLMNARGRNIHVAGTVGADLWQGQRRVQLRVLDAAFAP
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgatggagccggccgataccgtggcccgcgcatttttaagcgtggagcggtcggcaaca
gaacagcggtgggtgtctcggctggatcaggccgggcagaaccgtgcgctggccatgtcc
caggtccacggtattccggaactgatcgcccgggtgctcgccgggcgcggtgtaggggtg
gacgatgccctggcgttccttgatcccaccattcgctccctgatgcccgacccgcatgtg
ctgaccgattgcgagaaggccgccgagcggcttgtgcgcgccattgaagcgggtgagaag
gtggcgatcttcggtgattacgatgtcgacggcgctgcttcctccgcgttgatgtaccgg
tttcttgcacatttcgggctgacgcccgagatctacattcccgaccgaattttcgagggt
tatgggcctaacccggcggcgatgcagcagctggccgccaatggcgcgacgctgatcgtg
acggtggactgcggatccaccagccatgaatcgctcaaggcggcaaaagaggcacgaacg
gacgttgtggtcatagaccaccatcaggtgggtacggaactgccgccggcggtggcgctg
gtcaatcccaaccgggaggacgatctgtcggggcaggggcatctctgtgccgctggcgtg
gtgttcctcgtgctcgtcgccacgcttcgcgttctcaaggacaggcggcaccgccaggcc
ttcacgctcgatctgctgtcattgctcgacatcgttgcgcttgcgacggtctgcgatgtg
gttcccctgaaagggctgaaccgcgcctatgtggtgaagggcctgattgccgcacgccac
atgaaaaatgccggccttgccgcgctgttcaagaaggcggggctgggcgggcctgtgaca
ccctatcatttcggtttcctgatcggaccccgcatcaacgccggggggcgtattggcgac
gctgcgcttggcagccgattgttgacgatcgatgattcctcgcaggccgaggtgattgcc
gagcggctggacgagctgaaccgcgagcgacaggcgatggaagcggcgatgcttgcggag
gccgaagcggaggccctgttcgaatatggcgacggctcgggtgccggtgttatcgtcacc
gcgcgtgaaaactggcatcccggcattgtcggcttgttggcctcgcgcctgaaggatcgc
ttccgccgcccggcttttgccattgccttcgatccctccggcaagggcaccggctccggc
cgttcgatcgccggcttcgacatggggcggatggtgcgcgctgccgtggaggccggcctg
ctggtcaagggcggcggtcacgccatggcggcaggcctgacggttgagcgcgccaatctc
ggcaagctcaggacctttttcgaagaagccgcggcaaagaccgtaaacgagctggtagag
agcagcgtattgaagattgatggcgccatcggcgcttcgggggctacgttgcagcttgtc
gaccagctggaacaggccggtccctatggttccggtcattctcagccgatctttgccgtt
ccggcgcatcgcctgcgtgatgtgcggctggtgggcacatcccacgtcaagatcacgctg
gaggccatggatggctcacggctggacggaatcgcgttccgcgccgccgaggcgcccctg
ggacagatgctcatgaatgcccgcggacggaatattcacgtcgcgggtactgtgggcgcc
gatctctggcaggggcaaaggcgggttcaactgcgtgttctggacgccgctttcgcgccc
tga
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