Rhizobium sp. S41: BA939_19590
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Entry
BA939_19590 CDS
T05451
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhv
Rhizobium sp. S41
Pathway
rhv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BA939_19590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhv03400
]
BA939_19590
Enzymes [BR:
rhv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BA939_19590
DNA repair and recombination proteins [BR:
rhv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BA939_19590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANV26162
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Position
2:1066412..1069063
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AA seq
883 aa
AA seq
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MANDKLSTYRQKRDFQKTQEPSGKTKLKASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPQDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNRTPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDREGGKRTNWLLIKHRDDFSVDENGAAILDEN
NTSVASGRAMAAIAAGKGKKPKPFMVQSGDVQADAVWDSNHGLAADKRAADTKKKRPASR
KAAKSAMPAFIPPQLCETLERPPSADGWIHEIKFDGYRIQARSENGEVTLKTRKGLDWTA
KYPAIATSAASLPDAIIDGEICALDENGAPDFAALQAALSEGKTDALVYFAFDLLCEGSE
DLRQLPLTERKKRLEALLSEAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQADAP
YQSGRTDTWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVFRDDHFVYVGRVGTGYGAKTV
DTILPKLRELETSKSPFTGIGAPKKEPNIVWVKPELVAEIQFAGWTADGLVRQAAFKGLR
EDKPAKEVEAETPASPGKTETPTPARPKPSRPVRGKNTKAEVMGVMISSPDKPLWPDAND
GEPVTKEDLAHYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELVK
VFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPNEPEVPGRLVFDLDPGPDVPFSTVV
EAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWPEAKGFAHDVCMQMARD
NPDLYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARPGAPVSMPLTWKQVKADLDP
KRFTIRTVPALLSKTTAWEDYCDGQRSLEQAIKRLTKSMKQAA
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgacaagctttcgacctacaggcagaaacgcgattttcagaaaacgcaggag
ccaagcggaaaaacgaagctgaaagcttcaaaccgcaggcgctttgtcatccagaaacat
gacgccacgcggctccattatgacctgcgcctcgaactcgacggcgtcttcaagtcctgg
gctgtgaccaagggaccgtctcttgatccccaggacaagcgcctggccgtggaggtggaa
gaccacccgctggactatggtgacttcgaaggcacgattcccaaaggccagtatggcggc
ggcacggtcatgctctgggatcgcggctactgggagccggaaggcaacaggacgcccgag
caggctctcgccaagggcgacttcaagtttacccttgaaggagagcggctgcatggcagc
ttcgtgctggtgcggatgcggaacgaccgtgagggtggcaagcggacgaactggctgctg
atcaagcatcgcgacgacttctcggtcgatgaaaacggcgccgccatccttgacgaaaac
aacacgtcggttgcctcgggcagagccatggccgccatcgccgccggtaaaggaaagaaa
ccaaaaccgttcatggtgcagagcggcgatgtgcaggccgacgccgtctgggacagcaat
catggactggcggcagacaaacgtgcggcggatacgaagaaaaagcgcccggcatcgcgg
aaagcagcgaagtccgcgatgcccgccttcatacctccgcagctttgcgaaacgctcgaa
cgcccaccctcggccgatggctggatccacgagatcaaattcgacggataccgtattcag
gcgcgcagtgaaaacggcgaagtcacgctgaagacgcgcaaggggctggactggacggcc
aagtatccggcgattgcgacatcggccgcaagcttgcctgatgccatcatcgacggtgag
atctgtgcgctcgatgaaaacggtgccccggacttcgccgcacttcaggcggcgctgtca
gaaggtaaaacggatgcgctcgtctattttgctttcgacctgctgtgcgaggggagtgag
gatctaaggcaactaccgcttacggaacgcaagaaaaggctcgaagcgcttctgagcgag
gcgggggaagatccgcgcctgcggttcgtcgaacatttcgagaccggtggtgatgcagta
ttgaaatcggcgtgcaagctctcgctggagggcattgtctcgaagcaggcggatgccccc
tatcagtcggggcgcaccgatacctgggcgaaatccaaatgccgcgccggacatgaggtt
gtcattggcgcttacgcgaaaaccaacggcaagtttcgttcacttcttgtcggcgtcttc
agggacgatcacttcgtctatgtcgggcgggtcgggaccggctatggtgccaaaacggtg
gatacaatcctgccgaagctccgggaactggaaacctcaaaatcgccctttaccggaata
ggcgctccgaaaaaggaacccaacatcgtctgggtcaagcccgaactggtggccgagatc
cagttcgccggctggaccgcggacggactggttcgtcaggcagccttcaagggtttgcgc
gaagacaagccggcgaaggaggtcgaggccgaaacgccggcatcgcccgggaaaactgaa
acgccaacgccggcccggccaaagccgtcgcgaccggtacgcggcaagaacaccaaggcc
gaagttatgggcgtgatgatctccagccctgacaagccgctctggcccgatgcaaatgac
ggtgagccggtcaccaaggaggatctcgcgcactatcatgaggccgttggtccatggctg
atcgaccatatcaagggacggccatgctctatcatccggacacctgacggcatcggcggt
gagcagttcttccagagacacgcgatgccgggaacgtcgaacctgctcgaactggtcaag
gtgttcggcgacaagaaaccctatctgcagattgatcgcgttgagggccttgccgccatc
gcccagatcggcggcgtcgaactgcatccctggaattgcgagcccaacgaaccggaggtg
cccggtcgtcttgtcttcgaccttgatccgggtccggacgtacccttctccaccgtggtc
gaagccgcgcgggaaatgcgcgaccggctggaggagcttggcctcgtcagcttctgcaag
accaccggcggcaagggccttcacgtcgtcaccccgcttgcggtaccgaagggaaagaag
ctgagctggccggaggcgaaaggcttcgcacacgatgtctgcatgcagatggcccgtgac
aaccccgacctttacctgatcaagatggccaagaaccagcgcaacggccggatcttcctc
gactacctgcgcaatgaccgaatggcgactgctgttgcgccgctgtcaccgcgcgcccgg
ccaggcgcaccagtatcgatgccactgacctggaaacaggtaaaagcggatcttgatccg
aaacgcttcaccattcgcaccgtaccggcgcttttgtcgaagacaaccgcctgggaggat
tactgcgacgggcagcgttcgctggagcaggccatcaagcggctgacgaagtcgatgaaa
caggccgcctga
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