Rhodoplanes sp. Z2-YC6860: RHPLAN_34800
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Entry
RHPLAN_34800 CDS
T04290
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhz
Rhodoplanes sp. Z2-YC6860
Pathway
rhz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RHPLAN_34800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhz03400
]
RHPLAN_34800
Enzymes [BR:
rhz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RHPLAN_34800
DNA repair and recombination proteins [BR:
rhz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RHPLAN_34800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMN41912
UniProt:
A0A127EUJ3
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All DBs
Position
4059901..4062480
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AA seq
859 aa
AA seq
DB search
MAPRGGLAEYNKKRDFSRTAEPKGERRKSGKQLAYLIQKHDASRLHYDFRLEWDGKLLSW
AVPKGPSESTTDKRLAVHVEDHPIEYGTFEGSIPEGEYGGGTVMLWDRGTWEPLDDVDEA
LRKGKMAFNLHGERLQGRYALVRLRARSKNDKDNWLLIKERDEFAHDGQNAVDTEDTSVA
SGRSMEEIAAGKKVWHSNRKKNGNGAAKPVAAKPAKTAARSKKNSGAKLPAFVSPQLATL
VDAPPNGSEWLHEIKYDGYRAITAIAGGEVKIYTRKALDWTERYQPLVPALARLPCDSAL
LDGEIVVADSGGHTDFGALQDALTRGGEGISYNLFDLLELDGEDLRKRPLIERKERLAQL
LKGVPAPLSYSDHVESAGENVYTEACKLGLEGIISKRADAPYVSGRSQAWLKTKCGMEQE
FVIIGWRPSDKPGRPFSSLLLGLREDGELRYAGRVGSGYTGERLEDLGAKFKALERKSPP
VKDVPREIVRDALFLEPKLVAQIAFRGWTHDNLVRQASFKGLRTDKPASEIVRERAMPKA
TAVKRAKAETKKAPQRRAATPKSRGGEEAEFAGVRVTHPDRVLFADQGVTKRDLIEYYLD
VAGIMLPHVAQRPLALVRCPAGSGDCFFQKHASAGFPDEFGHIRIKEKSATREYMTIEDE
RGLVAAVQVGVLELHIWCSRTETLEQPDRMVFDFDPDEGLDFARVRDAARDMRDRLKDLG
LESFPMATGGKGIHVVVPLTPSHSWEEHRDFAEALARVMAAEEPDRFVANMSKEKRKGKI
FIDYLRNQRGATAISPYSTRSRKGAFVATPISWQQLSRLKDARPATIADAKKLLKADPWP
EYARVKQFLPLDRLAKIKR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggctccgcgcgggggactggccgaatacaacaagaagcgcgacttctcgcgcactgcg
gagccgaaaggcgagcggcgcaagtccggcaagcagctcgcctatctgatccagaagcac
gacgcgagccggctgcattacgacttccgcctcgaatgggacggcaagcttctgagctgg
gcggtgccgaaggggccgagcgaaagcacgaccgacaagcggctcgcggtccatgtcgag
gaccatccgatcgaatacggcaccttcgaaggcagcattcccgagggcgagtacggcggc
ggcaccgtgatgctgtgggaccgcggcacctgggagccgctcgacgacgtcgacgaggcg
ctgcgcaagggcaaaatggcgttcaacctgcacggcgagcggctgcaaggccgctatgcg
ctggtgcggctgcgcgcccgcagcaagaacgacaaggacaactggctgctgatcaaggag
cgcgacgagttcgcccacgacggccagaacgcagtcgacaccgaggatacgagtgtcgcg
agcggccgcagcatggaagagatcgcggccggcaagaaggtctggcacagcaaccggaag
aagaacggcaacggcgcggccaaaccggtggcagctaaaccggcgaagaccgccgcgcgc
tcaaaaaaaaactccggcgcaaagctcccggcgttcgtaagcccgcaactcgcaacgctg
gtcgacgcgccgcccaacggaagcgagtggctgcacgagatcaagtacgacggctatcgg
gccatcaccgccatcgctggcggtgaggtgaagatctacacccgcaaggcgctggactgg
accgagcgctatcagccgctggtgccggcgttggcgcggctgccttgcgacagcgcgctg
ctggatggcgagatcgtggtggccgactctggcggacacaccgacttcggcgctctgcag
gatgcgctcacaaggggcggcgaggggatcagttacaacctcttcgatcttttggagctt
gatggcgaggatttgcgcaagcgcccgctgatcgagcgcaaggagcgccttgcgcaactg
ctcaagggcgttccggcgccgctcagctattccgatcatgtcgagagtgcgggcgagaac
gtttacaccgaggcctgcaagctcgggctcgaaggcatcatctccaagcgcgccgatgcg
ccttatgtgtcgggccgcagccaggcctggctgaagaccaaatgcggcatggagcaggag
ttcgtcatcatcggctggcggccgtcggacaagccgggccggccgttcagctccctgctg
ctgggcctgcgcgaagacggcgagctgcgctacgccggccgcgtcggcagcggctatacc
ggcgagcggctggaagacctcggcgccaagttcaaggcgctggagcgcaagagcccgccg
gtcaaggacgtgccgagagagatcgtgcgcgatgcgctgttcctggagccgaagctcgtc
gcgcagatcgcgtttcgcggctggacgcatgacaatctcgtgcgtcaggcctcgttcaag
ggattgcgcaccgacaagcctgcatccgagatcgtgagggagcgtgccatgccgaaggcc
acggcggtcaaacgcgccaaagctgaaacgaagaaggcgccgcaacggcgggctgccacg
ccgaaatcgcgcggcggcgaggaggccgagtttgccggcgtccgcgtcacccatccggac
cgcgtgctgttcgccgaccagggcgtcaccaagcgcgatctgatcgagtactacctcgac
gttgccgggatcatgctgccgcatgtcgcgcagcggccgctcgctctggtgcggtgtcct
gcgggcagcggcgattgcttcttccagaagcacgcttcggcggggtttcccgacgagttc
ggccacatcaggatcaaagagaaatcggcgacccgcgagtacatgaccatcgaggacgag
cgcggcctggtcgcggccgtgcaggtcggcgtgcttgaactgcacatctggtgctcacgc
accgagacgctggagcagcccgatcgcatggtgttcgacttcgacccggacgaaggcctc
gacttcgcccgcgtgcgcgatgccgcgcgcgacatgcgcgatcggctgaaggacttgggc
ctggaaagcttcccgatggcaaccggcggcaagggcatccatgtggtggtgccgctgacg
cccagccacagctgggaggagcaccgcgatttcgccgaggcgctggcgcgcgtgatggct
gccgaggagccggatcgcttcgtcgccaacatgtcgaaggaaaagcgcaaggggaagatc
ttcatcgactatctgcgcaaccagcgcggcgccacggcgatctcgccctattcgacgcga
tcgcgcaaaggcgcgtttgtcgccacaccgatctcgtggcagcaattgtcgcggctgaag
gacgcgcggccggccacgattgcagacgcgaagaagctgctgaaggccgatccatggccg
gaatacgcgcgagtcaaacaattcctgccgctcgacaggcttgcgaaaatcaagcggtag
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