KEGG   Rhodoplanes sp. Z2-YC6860: RHPLAN_34800
Entry
RHPLAN_34800      CDS       T04290                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhz  Rhodoplanes sp. Z2-YC6860
Pathway
rhz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RHPLAN_34800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhz03400]
    RHPLAN_34800
Enzymes [BR:rhz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RHPLAN_34800
DNA repair and recombination proteins [BR:rhz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RHPLAN_34800
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: AMN41912
UniProt: A0A127EUJ3
LinkDB
Position
4059901..4062480
AA seq 859 aa
MAPRGGLAEYNKKRDFSRTAEPKGERRKSGKQLAYLIQKHDASRLHYDFRLEWDGKLLSW
AVPKGPSESTTDKRLAVHVEDHPIEYGTFEGSIPEGEYGGGTVMLWDRGTWEPLDDVDEA
LRKGKMAFNLHGERLQGRYALVRLRARSKNDKDNWLLIKERDEFAHDGQNAVDTEDTSVA
SGRSMEEIAAGKKVWHSNRKKNGNGAAKPVAAKPAKTAARSKKNSGAKLPAFVSPQLATL
VDAPPNGSEWLHEIKYDGYRAITAIAGGEVKIYTRKALDWTERYQPLVPALARLPCDSAL
LDGEIVVADSGGHTDFGALQDALTRGGEGISYNLFDLLELDGEDLRKRPLIERKERLAQL
LKGVPAPLSYSDHVESAGENVYTEACKLGLEGIISKRADAPYVSGRSQAWLKTKCGMEQE
FVIIGWRPSDKPGRPFSSLLLGLREDGELRYAGRVGSGYTGERLEDLGAKFKALERKSPP
VKDVPREIVRDALFLEPKLVAQIAFRGWTHDNLVRQASFKGLRTDKPASEIVRERAMPKA
TAVKRAKAETKKAPQRRAATPKSRGGEEAEFAGVRVTHPDRVLFADQGVTKRDLIEYYLD
VAGIMLPHVAQRPLALVRCPAGSGDCFFQKHASAGFPDEFGHIRIKEKSATREYMTIEDE
RGLVAAVQVGVLELHIWCSRTETLEQPDRMVFDFDPDEGLDFARVRDAARDMRDRLKDLG
LESFPMATGGKGIHVVVPLTPSHSWEEHRDFAEALARVMAAEEPDRFVANMSKEKRKGKI
FIDYLRNQRGATAISPYSTRSRKGAFVATPISWQQLSRLKDARPATIADAKKLLKADPWP
EYARVKQFLPLDRLAKIKR
NT seq 2580 nt   +upstreamnt  +downstreamnt
atggctccgcgcgggggactggccgaatacaacaagaagcgcgacttctcgcgcactgcg
gagccgaaaggcgagcggcgcaagtccggcaagcagctcgcctatctgatccagaagcac
gacgcgagccggctgcattacgacttccgcctcgaatgggacggcaagcttctgagctgg
gcggtgccgaaggggccgagcgaaagcacgaccgacaagcggctcgcggtccatgtcgag
gaccatccgatcgaatacggcaccttcgaaggcagcattcccgagggcgagtacggcggc
ggcaccgtgatgctgtgggaccgcggcacctgggagccgctcgacgacgtcgacgaggcg
ctgcgcaagggcaaaatggcgttcaacctgcacggcgagcggctgcaaggccgctatgcg
ctggtgcggctgcgcgcccgcagcaagaacgacaaggacaactggctgctgatcaaggag
cgcgacgagttcgcccacgacggccagaacgcagtcgacaccgaggatacgagtgtcgcg
agcggccgcagcatggaagagatcgcggccggcaagaaggtctggcacagcaaccggaag
aagaacggcaacggcgcggccaaaccggtggcagctaaaccggcgaagaccgccgcgcgc
tcaaaaaaaaactccggcgcaaagctcccggcgttcgtaagcccgcaactcgcaacgctg
gtcgacgcgccgcccaacggaagcgagtggctgcacgagatcaagtacgacggctatcgg
gccatcaccgccatcgctggcggtgaggtgaagatctacacccgcaaggcgctggactgg
accgagcgctatcagccgctggtgccggcgttggcgcggctgccttgcgacagcgcgctg
ctggatggcgagatcgtggtggccgactctggcggacacaccgacttcggcgctctgcag
gatgcgctcacaaggggcggcgaggggatcagttacaacctcttcgatcttttggagctt
gatggcgaggatttgcgcaagcgcccgctgatcgagcgcaaggagcgccttgcgcaactg
ctcaagggcgttccggcgccgctcagctattccgatcatgtcgagagtgcgggcgagaac
gtttacaccgaggcctgcaagctcgggctcgaaggcatcatctccaagcgcgccgatgcg
ccttatgtgtcgggccgcagccaggcctggctgaagaccaaatgcggcatggagcaggag
ttcgtcatcatcggctggcggccgtcggacaagccgggccggccgttcagctccctgctg
ctgggcctgcgcgaagacggcgagctgcgctacgccggccgcgtcggcagcggctatacc
ggcgagcggctggaagacctcggcgccaagttcaaggcgctggagcgcaagagcccgccg
gtcaaggacgtgccgagagagatcgtgcgcgatgcgctgttcctggagccgaagctcgtc
gcgcagatcgcgtttcgcggctggacgcatgacaatctcgtgcgtcaggcctcgttcaag
ggattgcgcaccgacaagcctgcatccgagatcgtgagggagcgtgccatgccgaaggcc
acggcggtcaaacgcgccaaagctgaaacgaagaaggcgccgcaacggcgggctgccacg
ccgaaatcgcgcggcggcgaggaggccgagtttgccggcgtccgcgtcacccatccggac
cgcgtgctgttcgccgaccagggcgtcaccaagcgcgatctgatcgagtactacctcgac
gttgccgggatcatgctgccgcatgtcgcgcagcggccgctcgctctggtgcggtgtcct
gcgggcagcggcgattgcttcttccagaagcacgcttcggcggggtttcccgacgagttc
ggccacatcaggatcaaagagaaatcggcgacccgcgagtacatgaccatcgaggacgag
cgcggcctggtcgcggccgtgcaggtcggcgtgcttgaactgcacatctggtgctcacgc
accgagacgctggagcagcccgatcgcatggtgttcgacttcgacccggacgaaggcctc
gacttcgcccgcgtgcgcgatgccgcgcgcgacatgcgcgatcggctgaaggacttgggc
ctggaaagcttcccgatggcaaccggcggcaagggcatccatgtggtggtgccgctgacg
cccagccacagctgggaggagcaccgcgatttcgccgaggcgctggcgcgcgtgatggct
gccgaggagccggatcgcttcgtcgccaacatgtcgaaggaaaagcgcaaggggaagatc
ttcatcgactatctgcgcaaccagcgcggcgccacggcgatctcgccctattcgacgcga
tcgcgcaaaggcgcgtttgtcgccacaccgatctcgtggcagcaattgtcgcggctgaag
gacgcgcggccggccacgattgcagacgcgaagaagctgctgaaggccgatccatggccg
gaatacgcgcgagtcaaacaattcctgccgctcgacaggcttgcgaaaatcaagcggtag

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