Roseovarius indicus: RIdsm_02035
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Entry
RIdsm_02035 CDS
T06222
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rid
Roseovarius indicus
Pathway
rid03410
Base excision repair
rid03430
Mismatch repair
rid03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RIdsm_02035 (recJ)
03430 Mismatch repair
RIdsm_02035 (recJ)
03440 Homologous recombination
RIdsm_02035 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rid03400
]
RIdsm_02035 (recJ)
DNA repair and recombination proteins [BR:
rid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RIdsm_02035 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RIdsm_02035 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RIdsm_02035 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
Prok-RING_1
QRPTase_C
Motif
Other DBs
NCBI-ProteinID:
QEW26237
UniProt:
A0A0T5PD36
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Position
complement(2190323..2192065)
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AA seq
580 aa
AA seq
DB search
MSFLGVESSLTGRRWVGPSSETDRLAEALMQSAALPRPICQTLARLGVAPEEAAGYLEPK
LRDLLPDPRRLKDMETAAARFLDEVRRKGKIAIFADYDVDGGASAALLIDWLRQMGLQAT
LYIPDRIDEGYGPNEPAMAELAANHDLIVCVDCGTLSHDAVAAAKGADVIILDHHLGGET
LPDATAVVNPNRQDEPGDLGHLCAAAVVFLMLVEAGRQLREAGQKGPDLMAMLDLVALAT
VADVAPLKGVNRAFVQQGLKVMAGRHRPGLVALSDVSRLDSAPTSYHLGFVLGPRVNAGG
RIGKADLGARLLACDNPHEAQAMADRLDQLNTERREIETAVRDAALEQAEARGLDAPLVW
AAKDGWHPGVVGIVASRLKEATNRPAIVIGFEGDEGKGSGRSVSGVDLGAAIHRLAAEGL
LIKGGGHRMAAGLTVARDKLEAAMERLSELLERQGAGTAGPRDLALDGILMPGAATPELV
NQIETAGPFGAGAPGPRYAFPDMQIGFAKRVGANHLKLRFGDGMGPKLDAIAFGAYDTEI
GATLEAHGGARFHLAGRLDLNTWGGRQTVQLRLEDAARTG
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcctcggcgtcgaaagctccctaaccggccgccgctgggtcggcccctcgtcc
gagaccgaccggctggccgaggcgctgatgcagtctgccgccctgccccgcccgatctgc
cagaccctcgcccggctgggcgtcgccccggaagaggccgcaggctatctcgaaccgaag
ctccgcgacctcctccccgacccgcgccgcctcaaggacatggagaccgccgcggcccgt
ttcctcgacgaggtccggcgcaagggcaagatcgccatcttcgccgactatgacgtcgac
ggcggcgcctccgccgcgctgctgatcgactggctgcgccagatgggcctgcaggccacc
ctctacatccccgaccgcatcgacgagggctatggccccaacgagcccgccatggccgag
cttgccgccaatcacgacctcatcgtctgcgtcgactgcggcacgctcagccacgatgcc
gtcgccgcggccaagggcgccgacgtcatcatcctcgaccaccacctgggcggcgaaacc
ctccccgacgcaaccgccgtggtgaaccccaaccggcaggacgaaccgggcgacctcggc
catctctgcgccgccgccgtcgtcttcctgatgttggtcgaggcaggccgccaactgcgc
gaggccggccagaaaggccccgacctgatggccatgctcgacctcgtggcgctggccacc
gtggccgacgtggcccccctcaagggcgtgaaccgcgccttcgtgcagcagggcctcaag
gtcatggctggccgccaccgccccggcctcgtggcgctctccgacgtctcccgcctcgac
agcgcgcccacctcctatcacctgggcttcgtgctgggcccccgcgtcaacgccggtggc
cggatcggcaaggccgacctaggcgcgcgccttctggcctgcgacaacccgcacgaggcg
caggccatggccgaccgcctcgaccagctcaacaccgagcggcgcgagatcgagaccgcc
gtgcgcgacgccgccctcgaacaggccgaggcgcgcgggctcgacgcgccgctggtctgg
gccgcgaaagacggctggcacccgggcgtcgtcggcatcgtcgcctcccgcctcaaggaa
gccaccaaccgccccgccatcgtcatcggtttcgaaggcgacgagggcaagggctccggc
cgctccgtctcgggcgtcgacctcggcgcggcaatccaccgtctggcggcggaaggcctc
ctcatcaagggcggcggccaccgaatggccgcagggctcaccgtggcccgcgataagctg
gaagcagcgatggaacgcctctccgagctgctcgaacgtcagggcgccggcaccgccggc
ccccgcgacctcgctctcgacggaatcctgatgccgggggccgccacgcccgaactggtc
aaccagatcgaaaccgccggccccttcggcgcgggcgcccccggcccgcgctatgccttt
cccgacatgcagatcggctttgccaagcgggtgggcgccaaccacctcaagctgcgcttc
ggcgacggcatgggccccaagctcgacgccatcgccttcggcgcctacgacaccgagatc
ggcgccacgctggaagcgcatggcggcgcgcgcttccatctcgccgggcggctcgacctc
aacacctggggcggccggcagaccgtgcagcttcgcctcgaagacgccgcccgcaccggc
tga
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