Rhizobium indigoferae: U5G49_003267
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Entry
U5G49_003267 CDS
T09660
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rif
Rhizobium indigoferae
Pathway
rif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U5G49_003267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rif03019
]
U5G49_003267
Enzymes [BR:
rif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U5G49_003267
Messenger RNA biogenesis [BR:
rif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U5G49_003267
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
Flavi_DEAD
AAA_22
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
WQN38118
LinkDB
All DBs
Position
3251401..3253134
Genome browser
AA seq
577 aa
AA seq
DB search
MVRSGDSHCGAPKGYTLTNFESLGVSKPIVATLFQLGIETPTPIQEHAIPLLLEGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSL
RINVVVGGVSINKQQLQLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDL
GFVHDLRKIAKMVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVGGKNDKTELLRKSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDITIASGEPPANISGGPRRANGNGNNRNRNGGQGREG
QGRGEGRGDQNRSEHRGNRQERRPRREGEGSEVRAGGEERRPRPERPTSRNEDFRGQRRG
EATPDLGPDNDLASTSDFRSSAKPQRPAHHGAHANGEPSGHHRGNSRHAHGRPARKHGED
RGPQQAQAGEPRRDGNGGNRRGGSGSRNGGGQRRERA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcgatagtcattgtggcgccccgaaaggttataccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgctactttgttccagctcggcatcgagacg
ccgacgcccatccaggaacatgccattcccctcctcctcgaaggccgcgacctgatcggc
cttgcccagaccggcaccggcaagaccgccgctttcggcctgccgctgatcgaaaagctg
ctcgccgatgagcggcgtcccgacaaccgcacgacgcgcacgctgatcctggcgccgacc
cgcgaactggtgaaccagatcgccgagagcctgaagaagttcatccgcaagtcgtcgctg
cgcatcaacgtcgtcgtcggcggcgtctcgatcaacaagcagcagcttcagctcgaaaag
ggcaccgacatcctcgtcgccaccccgggccgcctgctcgacctcgtcaatcgccgcgcg
atcacgctgaccacggtccgctatctcgtgctcgacgaagccgaccagatgctcgacctc
ggcttcgtgcatgatctgcgcaagatcgccaagatggtgccgaaaaagcgccagaccatg
ctcttctcggccaccatgccgaaggcgatcgccgatctcgccggcgaatatctcgtcgat
cccgtcaaggtcgaagtcacgcccccgggtaaggctgccgacaaggtcgaacagtacgtc
catttcgtcggcggcaagaacgacaagacggaactgctccgcaagtcgctgaccgaaaac
cctgacggccgcgccatggtcttcctgcgcaccaagcacggtgcggagaagctgatgaag
catctcgagaatatcggctattccgtcgcctcgatccacggcaacaagagccagggccag
cgcgagcgggcgctgaaggccttccgcgacggcagcatcaagacgctgattgccaccgac
gtcgccgcccgcggcattgacatccctgctgtcagccatgtctacaactacgacctgcct
gaggtgcctgacgcctatgtccatcgcatcggccgcacggcgcgcgccggccgcgacggt
atcgccatcgctttctgcgctcccgacgaagccaagctgctgcgtgatatcgagcgcctg
atgggcatcgacatcactatcgcaagcggcgaaccgccggccaacatcagcggcggaccc
cgccgtgccaacggcaatggcaacaaccgcaatcgcaatggcggccagggtcgcgaaggt
cagggtcgtggcgaaggccgtggcgaccagaaccgttcggagcatcgcggcaaccgtcag
gaacgccgcccgcgccgcgaaggtgaaggcagcgaagtccgcgccggcggcgaggagcgt
cgtccgcgtccggagcgcccgaccagccgcaacgaggatttccgcggtcagcgccgcggt
gaagcgaccccggatctcggccccgacaacgatctggcctcgacctccgatttccgctcc
tctgcaaagccacagcgtccggcccatcacggcgcccatgccaatggtgaaccgagcggt
catcaccgcggcaacagccgtcacgcccatggccgtccggcccgcaagcacggcgaggac
cgcggcccgcagcaggcccaggccggcgaaccgcgccgggatggcaacggcggcaaccgt
cgcggtggctccggctcccgcaacggcggcggccagcgccgcgaacgcgcctga
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