Candidatus Riesia sp. GBBU: AOQ88_00885
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Entry
AOQ88_00885 CDS
T04782
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rig
Candidatus Riesia sp. GBBU
Pathway
rig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOQ88_00885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rig03019
]
AOQ88_00885
03016 Transfer RNA biogenesis [BR:
rig03016
]
AOQ88_00885
Enzymes [BR:
rig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AOQ88_00885
Messenger RNA biogenesis [BR:
rig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AOQ88_00885
Transfer RNA biogenesis [BR:
rig03016
]
Prokaryotic type
tRNA degradation factors
AOQ88_00885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KhpA-B_KH
S1_2
Motif
Other DBs
NCBI-ProteinID:
ARC54805
UniProt:
A0A1V0HPR5
LinkDB
All DBs
Position
complement(189610..191718)
Genome browser
AA seq
702 aa
AA seq
DB search
MFNQIKKKFRYGKHTVLIETGVLARQATTSVVVSIDDTTVLVTVVEQKTEKKQRDFFPLT
VNYQERSYAAGKIPGSFFRREGRPGENEMLISRLIDRPIRPLFPIWYSNEIQIIATVLSV
NPDINPDIVSIIGASTALSLSNIPFNGPIGASRIGLINNELVLNPDVEELKKSKLDLIVS
GTSKAILMVESKSDILKEDQVINAIIFGHEKQQIVIDNINDLVKKIRNEKSFLDEEKDNE
IELYNNISSFARKHIRNSLSISEKENRKKEIERVKEKTVKFLLSVNLDSDNDEIDYIFSK
LEKEEIRRRILDGKSRTDGRKQDEIRKISSKIGILPRTHGSSLFTRGDTQALVTVTLGTD
KDAQIVDGVMGEHNESFLFHYNFPPYSVGEIGNIGFPKRREIGHGKLAKKSFLSVIPNQS
EFPYTIRVVSEITESNGSSSMASICGASLALMDAGVPIKSSIAGIAMGLIKEKNNFVILT
DISGEEDHIGDMDFKVAGNQEGISALQMDIKIQGITKEIITSALNKAKIARLNILEKMRN
VIDSPKGEISKFAPRIHTISINPNKIGEIIGKGGSVIKSLTEETGATIEIKDNGLVRVAS
SDKSKLICAIRRIKEIVEDIKIGKVYKGKIVRVSEFGVFVIFHGNKEGLVHKSQILDKEF
KKFKFFIGKNVSVKVTGLDKNGKARLNFKTIKNFKSITMKLR
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
ttgtttaatcaaattaaaaaaaaatttagatatggaaaacatacagtattaatagaaaca
ggagtattagcacgtcaagcaactacttcagtagttgttagtattgatgatacgacagtt
cttgtaactgttgtagagcaaaagactgaaaaaaaacaaagagatttctttcctttgaca
gtaaattatcaagaaagatcatatgcagctggtaaaattcctggaagtttttttagaaga
gaaggaaggccaggagaaaacgaaatgttgatttctaggttgattgatcgtcctataaga
ccattatttccaatttggtattcaaacgaaatacagataattgcaactgttctttcagta
aaccctgatattaatccagatattgtatcgattattggtgcgtctaccgctttatcatta
tctaatatcccgtttaatggaccaattggagcttctagaataggattaattaataacgaa
ctagttttaaatcctgatgtagaagaactgaaaaaaagtaagttggatttaatagtttct
ggcacttcaaaagccatattaatggtagaatcaaaatctgatatcttgaaagaagatcaa
gtaataaatgcaatcatttttggacatgaaaaacaacaaatagtgatagataacattaat
gatttagttaaaaaaataagaaatgaaaaatcatttcttgatgaagagaaagataatgaa
atagaattatataataatatctcaagtttcgctagaaaacacataagaaactcactttct
atatcagaaaaggaaaatagaaaaaaagagatagaaagagtcaaagaaaaaactgtaaag
tttttgctttctgttaatttagactcagataatgacgaaattgactatatcttttctaag
ttagaaaaggaggaaattagaagaagaatattggatggaaaatctagaactgatggaaga
aaacaagatgaaattagaaaaataagctcaaaaattggtatattacctagaactcatgga
tcgtctttatttacaagaggagatacacaagcattagttaccgtgacattaggtacagat
aaagatgctcagattgtagacggggttatgggagaacacaatgaaagttttttatttcac
tacaattttccgccgtactctgttggagaaattggtaacataggatttcctaaaagaaga
gaaataggtcatggaaaattagcgaaaaaatcattcttatctgtaattccaaatcaatct
gaatttccatatactattagagtagtttctgaaattacagaatcaaatggatcttcttct
atggcttctatatgtggagcttcacttgctcttatggatgctggtgtcccaattaagtct
tcaattgcaggtattgctatgggattaattaaagagaaaaataattttgttatattaaca
gacatttcaggagaagaagatcatataggagatatggattttaaagtggctggaaatcaa
gaaggaattagcgctcttcagatggatattaagattcaaggaattacaaaagaaattata
acttctgctttaaataaagcaaagatcgccaggttaaatattttggaaaaaatgagaaat
gttattgattcaccaaaaggagaaatttcaaagtttgctccaaggatacatacaatttct
attaatccaaataaaattggagaaattattggaaaaggtggatctgtaataaaatctcta
acagaggagactggtgcaacaattgaaataaaagataatggattagttagagtagcgtcc
tctgataagagtaaattaatttgtgctattcgtagaattaaagaaattgttgaagatata
aaaataggcaaagtgtataaaggtaagatagtacgagtgtctgaatttggagtttttgta
atttttcatggaaataaagaagggttagtacataagtctcaaatcttagataaagaattt
aaaaagttcaaattttttattggtaaaaatgtttcagtaaaagtaactggactggacaaa
aatggaaaagcaagactaaactttaaaactataaaaaattttaagtcaattactatgaaa
ttaagataa
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