Agrobacterium pusense IRBG74: BN877_I1408
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Entry
BN877_I1408 CDS
T02867
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
rir
Agrobacterium pusense IRBG74
Pathway
rir02024
Quorum sensing
rir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN877_I1408
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BN877_I1408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rir03019
]
BN877_I1408
03036 Chromosome and associated proteins [BR:
rir03036
]
BN877_I1408
Messenger RNA biogenesis [BR:
rir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
BN877_I1408
Chromosome and associated proteins [BR:
rir03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
BN877_I1408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
DUF3285
Motif
Other DBs
NCBI-ProteinID:
CDI08315
UniProt:
U4Q3N6
LinkDB
All DBs
Position
1375932..1376414
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AA seq
160 aa
AA seq
DB search
MAERSQNLQDLFLNTVRKKKISLTIFLINGVKLTGVITSFDNFCVLLRRDGHSQLVYKHA
ISTIMPGQPLELKIEEGPDRSQNLQDLFLSTVRKKNIALTIFLINGVKLTGVVTAFDNFC
ELLRRDDHAQLVYKHAISTIMPGQPMQMFENEEGAAREAS
NT seq
483 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacgttctcaaaaccttcaagatcttttcctcaacaccgtacgcaagaaaaag
atttcactgacgatcttcctgatcaacggtgtgaagctcacgggcgtgataacgtccttc
gataatttctgcgttctgctgcgccgggacggtcattcgcagctggtttacaagcatgcg
atctcgaccatcatgcccggacagccgctggaactcaaaatcgaagaaggtccggaccgc
tcgcagaatcttcaggatctgttcctcagcacggttcgcaagaagaacattgcgctgacg
atcttcctgatcaacggtgtcaagctcacgggcgtggtcacggctttcgacaatttctgc
gagcttctgcgtcgcgacgatcacgcacagcttgtctacaagcacgctatttcgaccatc
atgccgggtcagccgatgcagatgttcgaaaacgaagaaggcgctgcacgcgaggcgtcc
tga
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