Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_3164
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Entry
Rleg_3164 CDS
T00926
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rlg
Rhizobium leguminosarum bv. trifolii WSM1325
Pathway
rlg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rleg_3164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlg03019
]
Rleg_3164
Enzymes [BR:
rlg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rleg_3164
Messenger RNA biogenesis [BR:
rlg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rleg_3164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
Flavi_DEAD
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACS57419
UniProt:
C6ATS7
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All DBs
Position
3163881..3165623
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AA seq
580 aa
AA seq
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MKPDRMVRSGDSHCGAPKGYTLTNFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEG
RDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFI
RKSSLRINVVVGGVSINKQQLQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEAD
QMLDLGFVHDLRKIAKMVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADK
VEQYVHFVAGKNDKTELLRKSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGN
KSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTAR
AGRDGIAIAFCAPDEAKLLRDIERLMGIDITVASGEAPANISGGPRRANGNGNNRNRNGG
QGREGQGRGEGRGDQNRSEHRGNRQERRPRREGEGSEVRAGGEERRPRPERQTSRNEDFR
GQRRGETTPDLGPDNDLASTSDFRASAKPQRPAHHGAHANGEPSGHHRGNSRHAHGRPAR
KHGEDRGPQQAQAGEPRRDGNGGNHRGGSRNGGGQRRERA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggatcgcatggtgcgttccggcgatagtcattgtggcgccccgaaaggttat
accttgactaattttgaatcgcttggtgtctccaagccgatcatcgctactttgttccag
ctcggcatcgaaacgccgacgcccatccaggaacattcaattcctctcctcctcgaaggc
cgcgacctgatcggccttgcccagaccggcaccggcaagaccgccgctttcggcctgccg
cttatcgaaaagctgctcgccgatgaacgccgccccgacaaccgcacgacgcgcacgctg
atccttgcgccgacccgcgaactggtgaaccagatcgccgagagcctgaagaagttcatc
cgcaagtcgtcgctgcgcatcaatgtcgtcgtcggcggcgtctcgatcaacaagcagcag
cttcagcttgaaaagggcacagacattctcgtcgccacgcccggccgcctgctcgacctc
atcaatcgccgcgcgatcacgctgactgccgttcgctatctcgtgctcgacgaagccgac
cagatgctcgacctcggcttcgtccacgatctgcgcaagatcgccaagatggtgccgaaa
aagcgtcagaccatgctgttctcggcgaccatgccgaaggcgatcgccgatcttgccggc
gaatatctcgtcgatcccgtcaaggtcgaagtcacgcctccaggtaaggctgccgacaag
gtcgagcagtacgttcatttcgtcgccggcaagaacgacaagacggagctgctgcgcaag
tcgctgaccgaaaaccccgatggccgcgccatggtcttcctgcgcaccaagcatggtgcc
gagaagctgatgaagcatctcgaaaacatcggctattccgtcgcctcgatccacggcaac
aagagccagggtcagcgcgagcgggcgctgaaggccttccgcgacggcagcatcaagacg
ctgatcgccaccgacgtcgccgcccgcggcatcgacattccggccgtcagccacgtctac
aactacgacctgcctgaagtgcccgacgcctatgtgcatcgcatcggccgcacggcgcgt
gccggccgcgacggcatcgccatcgctttctgcgctcccgacgaagccaagctgctgcgt
gatatcgagcgcctgatgggcatcgacatcactgtcgcaagcggcgaagcgccggcaaac
atcagcggcggcccccgtcgcgccaacggcaacggcaacaaccgcaatcgcaatggcggc
cagggtcgcgaaggtcagggtcgtggcgaaggccgtggcgaccagaatcgctccgagcat
cgcggcaaccgtcaggaacgccgcccgcgccgcgaaggtgaaggcagcgaagtccgcgcc
ggcggcgaggagcgtcgtccgcgtccggaacgccagaccagccgcaacgaggatttccgc
ggtcagcgccgcggtgaaacgacgccggatctcggccccgacaacgatctggcctcgacc
tccgatttccgcgcctctgcaaagccgcagcgtccggcccatcacggcgcccatgccaat
ggtgagccgagcggtcatcaccgcggcaacagccgccatgcccacggccgcccggcccgc
aagcacggcgaggaccgcggcccgcagcaggcccaggccggcgaaccacgccgcgacggc
aacggcggcaaccaccgcggtggctcccgcaacggcggcggccagcgccgcgaacgcgcc
tga
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