Rhizobium lentis: J0663_03330
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Entry
J0663_03330 CDS
T07189
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rln
Rhizobium lentis
Pathway
rln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0663_03330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rln03019
]
J0663_03330
Enzymes [BR:
rln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J0663_03330
Messenger RNA biogenesis [BR:
rln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J0663_03330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QSW95716
LinkDB
All DBs
Position
670759..672435
Genome browser
AA seq
558 aa
AA seq
DB search
MVRSGDIRCGAPKGYDLTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLISGRDLIG
LAQTGTGKTAAFGLPLIERLLADERRPDNRTTRTLILAPTRELVNQIAENLKKFIRKSPL
RINVVVGGVSINKQQLQLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDL
GFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVGGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDIAVASGEPPAHISAGGPRRGNGNNRNRGGGQGRENN
GRGEGRGDQNRSEHRGSRQERRPRPERTGRNEDFRGQHRSEAAPDLGADNDLVSTSDFRP
AKQRPAHGGPNGHHANGEPSGHHRGNGRHAHGRPARKHGEDRGQHQAQGGEQRRDGNGGN
RRGGSGSRNGGGQRRERA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcgatattcgttgtggcgccccgaaaggttatgacttgaccaatttt
gaatcgcttggtgtctccaagccgatcgtcgccaccttgttccagctcggcatcgaaacg
ccgacgccgatccaggaacaggccattcccctccttatttcaggccgcgatctgatcggc
ctcgcccagaccggaaccggcaagaccgccgccttcggcctgccgctcatcgagaggctg
cttgccgacgagcgccgccccgataaccgcacgacgcggacgctgatccttgccccgacg
cgcgaactggtgaaccagatcgccgagaacctgaagaagttcatccgcaagtcaccgctg
cgcatcaacgtcgttgtcggcggtgtttcgatcaacaagcagcagcttcagctcgaaaag
ggcaccgacatcctggtcgccactccgggccgcctgctcgatctcgtcaaccgccgtgcc
attacgctgacgacggtgcgctatctcgtgctcgacgaggccgaccagatgctcgatctc
ggcttcgtccacgatctgcgcaagatcgccaagctggtgccgaagaagcgtcagacgatg
ctgttttcggccaccatgccgaaggctatcgccgatctcgccggcgaatatctcgtcgat
cccgtcaaggtcgaagtcacgcctcccggcaaggctgctgacaaggtcgagcaatatgtc
catttcgtcggcggcaagaacgacaagaccgaactgctgcgcaaatcgctgacagaaaac
cctgacggccgcgccatcgtcttcctgcgcaccaagcacggtgcggagaagctgatgaag
catctcgacaatatcggttactccgtcgcctcgatccacggcaacaagagccagggtcag
cgcgagcgggcgctgaaggccttccgcgacggcagcatcaagacgctgattgccaccgac
gtcgccgcccgcggcatcgacatcccggccgtcagccatgtctacaactacgacctgccg
gaagtgcccgacgcctatgtccatcgcatcggccgcacggcgcgcgccggccgcgatggc
attgccatcgctttctgcgcccccgatgaagccaagctgctgcgtgatatcgagcgcctg
atgggcatcgacattgcggtagccagcggtgaaccgccggcccatatcagcgccggtggc
ccgcgtcgcggcaatggcaacaaccgcaaccgcggcggcggtcaaggtcgcgaaaacaat
ggtcgcggcgaaggccgtggcgaccagaaccgctcggaacatcgcggcagccgtcaggaa
cgccgcccacgccctgagcgcaccggccgcaacgaggatttccgcggtcagcaccgcagc
gaagcggctccggatctcggcgccgacaatgatctagtctcgacctccgatttccgcccg
gcgaagcagcgccccgcgcatggcggccccaatggccatcatgccaatggcgagccgagc
ggtcatcaccgcggtaacggccgtcatgcccacggccgcccggctcgcaagcacggcgaa
gaccgcggccagcaccaggcccagggcggcgaacagcggcgcgacggcaacggcggcaac
cgccgcggcggctcgggctctcgcaatggcggcggccagcgccgcgaacgcgcctga
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