Rhopalosiphum maidis (corn leaf aphid): 113553410
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Entry
113553410 CDS
T06065
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rmd03041
]
113553410
03016 Transfer RNA biogenesis [BR:
rmd03016
]
113553410
Enzymes [BR:
rmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113553410
Spliceosome [BR:
rmd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113553410
Transfer RNA biogenesis [BR:
rmd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113553410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
DUF592
Motif
Other DBs
NCBI-GeneID:
113553410
NCBI-ProteinID:
XP_026812529
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All DBs
Position
4:6999775..7002351
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AA seq
725 aa
AA seq
DB search
MAAAFEEMGVLPEIGKAIEEMDWLLPTDIQAEAIPLILGGGDVLIAAETGSGKTGAFCLP
VIQIVWETLKQTGKHRNSLPVNVSGVTDPWAMSVWDRSSAIAVTPDGKKCQSREQKDWHG
CRATKGVKNSGKYYFETTVTDEGLCRVGWSTPGAVLDLGTDKFGFGFGGTGKKSNNKQFD
SYGESFGLHDTIGCWLDLDNWTIGFSKNGKYLGDAFKIPSNLKTSAFYPAVVLKNAEIAF
NFGESSFKYDIPKDFTAISKAPSNRIELSQCNAPKIDSNTKKPSNAPYAIIIEPSRELAE
QTFNQIKSFKKYLEEPQVKDLLVVGGFSIKDQIAALSSGVDIIVATPGRLEDLISGGHLS
LSHCRFYILDEADGLLKQRYTKLIDNLHEKMPKVSCDGKRLQMIVCSATLHDFEVKKLAT
RLMHFPTWVDLKGEDAVPETVHHVVVTVDSQKDSSWTCLKNHIPTDGVHDRDNIRALNTS
EALSQGVKLLKGEYCIKAINKHKMDKALIFCRTKLDCDNLEKYFKQLGSFYTCCTLHGSR
NVNDRRMNLEKFKNGEIKFLICTDVAARGIDVNGLPFMINMTLPDDKTNYVHRIGRVGRA
ERMGLAISFVATTPEKVWYHGEWCPSRGQRCSNTNLTTNKGCCIWYNEPQYLAEIEDHLN
ITIPQIGSELDIPKNEFDGKVVYGQKKAKNGPSYKNHYDQLLSTINELTQLETKAQYLYL
HMLNN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgtttgaagagatgggagttttgcccgaaataggtaaagccattgaagaa
atggattggctgttgcctacggacattcaagcggaagcgatacctctaatacttggcggt
ggtgacgtgttaatagccgcagagactggtagtggtaaaacgggagcgttttgtttgccg
gttattcaaatagtgtgggaaacgctcaaacaaaccggtaaacaccggaatagtttacca
gtcaatgtatctggtgtcacagatccatgggccatgagcgtgtgggaccgttcatctgcc
atagccgtgacgccagacggtaaaaaatgtcaatcaagagagcaaaaggattggcatggt
tgtagagctaccaaaggcgttaaaaattcgggaaaatattatttcgaaacaactgtcact
gatgaaggtctgtgtcgagttggctggtctacaccaggggctgtgttagatctgggtaca
gataaatttggttttggttttggtggaacaggcaagaagtcaaataacaaacagtttgat
tcttatggagaaagttttggtttacacgatacaattggttgttggctagatctagacaat
tggactattggattcagtaaaaatggtaaatatcttggtgatgcatttaaaataccttca
aatttgaaaacatctgcattttatccagctgttgtgttaaaaaatgctgaaatagcattt
aattttggtgaatcatcatttaaatatgatattcctaaagacttcactgctataagtaaa
gcacctagcaatcgtattgaactctctcaatgtaatgctccaaaaatagattcaaataca
aaaaaaccaagtaatgcaccatatgcaataattattgaaccttctagagaattggctgaa
cagacttttaatcaaataaaaagctttaaaaaataccttgaagaaccgcaagttaaagat
ctcttagtagtaggtggttttagcattaaagaccaaattgctgcattgtcttctggtgtt
gatattattgttgctacccctggtcgtctggaagatctaatatctggtggccatttatct
ttatctcattgtagattttatatattggatgaagctgatggattactaaaacaacgttac
acaaaacttatagacaatctacatgagaagatgccaaaagtttcatgtgatggtaagaga
cttcaaatgattgtttgctctgctacacttcatgattttgaagtaaaaaaattggcgaca
cgtctcatgcactttccaacgtgggtagatcttaaaggtgaagacgctgttcctgagact
gtacaccatgttgtggttactgttgattcccaaaaagattcatcgtggacttgtttgaaa
aatcacattccaactgatggtgtacatgatagagataatataagagcactgaatacatct
gaagctttatctcaaggtgtaaagcttttaaaaggcgaatactgtatcaaagctattaac
aaacacaaaatggacaaagctcttatattttgccgcactaaacttgactgtgataattta
gaaaaatactttaaacaacttggttctttttatacttgttgtactcttcatgggtcgcga
aatgttaacgatcgtagaatgaatttggaaaagtttaaaaatggcgaaatcaagttttta
atttgtactgatgtagcagctcgtggcattgacgttaacgggttaccttttatgattaat
atgactttacccgatgacaagacaaattatgtacatagaattggtcgtgtgggtagagca
gaacgtatgggtttggccatttcatttgtagctactaccccagaaaaagtttggtatcac
ggtgaatggtgtccatccaggggacagaggtgttcaaatactaatttaactaccaacaaa
ggttgttgcatatggtacaatgaacctcaatatttggctgaaattgaagatcatttgaac
ataactataccacaaattggttcagaactggatattcctaagaatgaatttgatggaaaa
gttgtttatggtcaaaaaaaagcaaagaatggaccctcgtataaaaatcattatgaccaa
ttgttgtctactatcaatgaactcacacaattagaaactaaggctcaatatttgtatttg
cacatgcttaataattaa
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