Cupriavidus metallidurans: Rmet_4549
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Entry
Rmet_4549 CDS
T00351
Symbol
uvrA2
Name
(GenBank) Excinuclease ABC, A subunit (UvrA family protein)
KO
K03701
excinuclease ABC subunit A
Organism
rme
Cupriavidus metallidurans
Pathway
rme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rmet_4549 (uvrA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rme03400
]
Rmet_4549 (uvrA2)
DNA repair and recombination proteins [BR:
rme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rmet_4549 (uvrA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rmet_4549 (uvrA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
SMC_N
AAA_21
nSTAND1
AAA_16
AAA_23
RsgA_GTPase
AAA_22
nSTAND3
UvrA_DNA-bind
AAA_18
NACHT
AAA_33
AAA_25
Viral_helicase1
DnaJ_CXXCXGXG
ATPase
AAA_30
DUF4350
RNA12
Motif
Other DBs
NCBI-ProteinID:
ABF11414
UniProt:
Q1LEL2
LinkDB
All DBs
Position
megaplasmid:complement(1154918..1160797)
Genome browser
AA seq
1959 aa
AA seq
DB search
MIREDKLSDSGTIRIRGARQHNLKDVDLDLHTGQMTVVTGPSGSGKSSLVFDTLYAEGQR
RYVETFSAYARQFLDRMDRPQVDKVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLL
FARAAELFDRQTALPVRHDSPETIYAELVARTSAGQPFADARLVLTFPVELPESATEEEV
AQWLSVSGYTRVHGQRVVESATGNRKVLDVVADRFRIGNVEKARALEAIEASLKRGSGRV
SVHVVTDEGEGPVWKFSTGLHCPESDIRYADPQPALFSFNSAYGACDACRGFGRVIGVDL
GLVIPDVRKSLRDGAIKPMQTPAWKECQDDLMRYAAKAGIPRDLPWNQLSEAEQHWVIHG
SPDWNGQWNKQWYGVMRFFSYLESKAYKMHIRVLLSKYRSYTPCETCGGARLKTEALQWR
LGSAGNANAVLPPADRFLPRGVDWSRSQLEALPGLTVHDLMLMPIARIRRFFDDLTLPSA
LLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLF
VLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVMLAADRLIDMGPGPGERGGT
IIFDGTPEAIRKERTLTGDYLGGRRRVTDTSDWQLRPIDAATPRLRLEGAREHNLKDVTV
EIPLNRLVCVTGVSGSGKSTLLQDVLYPAMARHFGKATESPGVFRELVGADQVDDVVFVD
QSPIGKTARSNPASYVGAFDEIRKLFAKAPLALQRGYTAGTFSFNSGDGRCPTCGGSGFE
HVEMQFLSDVYLRCPDCDGTRYRAEALEVKIERAARGQAPRALSVADVLELTVSEATALF
ESDPAVLRVLAPIADVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAEAAQAQPVKNRKAVV
LPKRLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVIRASDWIVDLGPEG
GDAGGEVVCVGTPDDVRACAESHTGRALIHYDAALGEGGTLAAERAEIAEHGLPLQAAVQ
AARARRAIEGENVVRIVNAHEHNLKSLNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQ
RRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRL
LYVKLGIQHCVHDGAPVTSQSPASIVAQLMRDHRGQHVGLLAPLVVNRKGVYTDLAKWAK
ARGNTHLRVDGEFLPVDPWPRLDRFREHTIELPVGDIVVSPDNEAELRALLEQTLELGKG
VMHLLAPLDGLHDAMQGGKNTGHVGETKVFSTKRACPVCGTSYPELDPRMFSYNSKHGWC
NTCVGTGLALTREQRAAFDDTVLGGDDRGREQSLPSEEQEPEGVGDAACPDCSGTRLNPV
ARAVTFDTNAITDVAQWTVSDTRRWVDGLRLKGRDAEIARDVVTEIASRLQFLEEVGLGY
LSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILLDALRKLGDK
GNTLVVVEHDEDTIRRADHIIDIGPGAGKRGGSLVAQGGVEALAAAKDSTTGQFLAHPMI
HPLQARRPVTPARAGKPADPPQWLTVHGANLHNLRDVTARIPLTRLVTITGVSGSGKSTL
ARDVLMTNLLDAVGRSVMSSPATRRARAVAEKAGKPTATKSLSVEHAWHGCESISGWESI
DRVLEVDQTPIGKTPRSCPATYIGVWDAIRKMFAETLEAKARGYSASRFSFNTGEGRCPA
CEGQGVRTIGMSFLPDVKVPCDVCHGQRFNPETLAVTWRGKNIGEVLTMEIDEAVEFFSA
TTQIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHTL
YVLDEPTVGLHMADVARLIKVLHRLTDGGHSVVVIEHDLDVIAEADWIIDLGPEGGANGG
TIVGAADPEALSRIRASHTGAALVPVLARAAQGSERATG
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atgattcgagaggacaaattgtcagattccggcaccattcgcattcgcggcgcccgtcag
cacaacctcaaggacgttgatctcgacttgcacacgggccagatgaccgtggtgaccggg
ccgtccggttcgggaaagtcgagcctggtgttcgacacgctctacgccgagggccagcgt
cgctacgtcgagacgttcagtgcctatgcgcgccagttcctggatcgcatggatcggccg
caggtcgacaaggtggatggtgtcccgccagctatcgcgatcgaccagacgaacccggtg
cgtagctcgcggtccacggtcggcacgatgaccgagctcaacgatcacctgaaactgctg
ttcgcgcgcgcggcggaactgttcgaccggcagaccgcgttgccggtccggcatgactcg
ccagagacgatttatgcggaactggtggcccggacgagcgcggggcagccgtttgccgat
gcccggctggtgctgacgttcccggtcgagctgccggaatcggccaccgaggaagaagtc
gcccaatggctctcggtcagcggatacacccgggtgcacggccagcgcgtggtcgaatcg
gcgaccggaaaccgcaaggtgctcgacgtggtggcggaccgtttccgtattggcaacgtt
gagaaggcgcgggcgctcgaagccatcgaggcctcgctcaagcgtggcagcggccgtgtc
agcgtgcatgtggtgacggacgagggtgaagggccggtctggaagttctcgaccgggctg
cattgtccggaaagcgatatccgctatgcggacccgcagccggcgctgttctcgttcaat
tccgcctatggcgcgtgcgatgcctgccgtggattcgggcgcgtgatcggtgtcgatctg
gggctggtgattcctgacgtccgcaagtcgctgcgcgatggggcgatcaagccgatgcag
acccccgcgtggaaggagtgtcaggacgatctgatgcgctacgcggccaaggccggcatc
ccgcgcgatctgccgtggaaccagctcagcgaggccgaacagcactgggtgatccacggg
tcccccgactggaacgggcagtggaacaagcagtggtacggcgtgatgcggttcttcagc
tacctcgagtcgaaggcctacaagatgcatatccgcgtgttgctgtcgaagtaccgcagc
tacacgccttgcgagacctgcggcggtgcccgcctgaaaaccgaggcgctgcagtggcgc
ctggggagcgccgggaacgccaacgccgtgctgccgccggcggaccggttcctcccgcgc
ggcgtggactggagccgctcccaactggaagcgctgcccggcctgaccgtgcacgacctg
atgctgatgccgatcgcgcgcatccgccgtttcttcgacgacctgacgctgccgtcggcg
ctgctcgacgatgcgctcaagctgctgctggcggaggtccgcacacggctcaaatacctg
tgcgatgtgggtctgggttatctgacgctggaccgccagagccgcacgctttcgggcggg
gaagtgcagcggatcaacctgaccacggcgcttggcacgtcgctcgtcaatacgctgttc
gtgctcgacgagcccagcatcggcttgcatccgcgtgatctgaaccgcatcgtggaggcc
atgcatcgcctgcgcgacgccggcaatacgctggtggtggtggagcatgacccgtccgtg
atgctggccgcggatcgcctgatcgacatgggaccggggccgggcgaacgtggcggcacg
atcatcttcgacggaacgccggaggccatccgcaaggagcggacccttaccggggactac
ctcggcggacgccgccgcgtgacggacacgtcggactggcaattgcgcccgatcgacgcc
gccacgccgcgcctgcggttggaaggcgcgcgcgagcataacctcaaggacgtcacggtc
gagatcccgctcaatcgcctggtctgcgtgaccggtgtgtcgggctcgggcaaatcgacg
ctgctgcaggacgtcctgtatccggccatggcacgccatttcggcaaggctaccgagtcg
ccgggcgtgtttcgcgaactggttggcgcggaccaggtcgatgacgtggtcttcgtcgac
cagtcgccgatcggcaagaccgctcgctcgaacccggccagctacgttggcgcgttcgac
gagatccggaagttgtttgccaaggcgccgctggcactgcaacgcggctatacggctggc
accttcagtttcaactctggcgatggccgttgcccgacctgtggtggttcagggttcgag
catgtcgagatgcagttcctctcggatgtctacctgcgttgccccgattgtgatggcacg
cgctatcgcgctgaggcgctggaagtcaagatcgagcgcgccgcgcgcggtcaggcgcca
cgcgcgctgagcgtggccgacgtgctggaactgacggtcagcgaagccacggccctgttc
gagagcgatcctgccgtgttgcgcgtgctggcgccgattgcggacgtcggcctggaatac
gtcaagctggggcagcccgtgccgacactgtctggcggcgaggcgcagcgcctcaagctg
gccggctttctggcggaggcggcgcaggcccagccggtcaagaaccgcaaggcggtggtg
ttgccgaagcgcctgtttatgttcgacgagcccaccaccgggctgcacttcgacgatatc
gccaagctgatgcgggctttcggcaagctgctcgacggcggccattcactgatcgtcatc
gagcacaacctggacgtgatccgtgcttcggactggatcgtcgatttgggtccggaaggt
ggcgacgccggcggcgaggtggtctgcgtggggaccccggacgacgtccgggcgtgtgcc
gaatcgcataccggccgcgcgctgatccactatgacgcggcactgggcgagggcgggacg
ttggcggcggagcgcgccgagatcgcggaacatggcctgccgctgcaggcggcggtgcag
gccgcgcgggcacgccgcgccattgagggcgaaaacgtcgtgcgtatcgtgaatgcccac
gagcacaacctcaagtcgctcaacgtcgatatcccgcacggcaaattcaatgtcattacc
ggggtatcgggttcgggcaagtcgacgctcgcgttcgacatcctgttccacgaaggacaa
cgccgctatctggagtccctcaacgcctatgcgcgttcgatcgtgcagccggccgggcgg
cccgaagtggatgcggtctatggcattccgcccacggtggcgatcgagcagcgtctgtcg
cgtggcgggcgcaagagtaccgtggccaccacgtcggaggtttggcacttcctgcggctg
ctctacgtcaagctcggcatccagcattgcgtgcacgacggcgcgcccgtgacttcgcag
agtccggcatcgatcgtcgcccagctgatgcgcgatcatcgcggccagcacgtgggtttg
ctggcgccgctggtggttaaccgcaagggtgtctataccgatctggccaagtgggccaag
gcacgtggcaacacgcatctgcgcgttgatggcgagttcctgccggtcgatccgtggcca
cgcctggaccgcttccgcgagcacacgattgagttaccggtgggcgatatcgtcgtgtcg
ccggacaatgaggcggaactgcgcgcgctgctggagcagacactcgaactcggcaagggg
gtcatgcatctgctggccccgctcgatggattgcacgacgcgatgcagggaggcaagaac
accgggcacgtgggcgaaacgaaggtgttttcgaccaagcgtgcctgtccggtctgcggc
acaagctatccggagcttgatccccgcatgttctcgtacaacagcaagcatggctggtgc
aacacgtgcgtgggcacgggtctggcgctgacacgcgagcagcgtgccgcgtttgacgat
accgtgctcggtggcgatgaccgtggccgtgagcagagcctgccgtcggaagagcaagag
ccggagggcgtgggtgacgcggcgtgtcccgattgcagcgggacgcgtctcaatcccgtg
gcgcgtgcggtaacgttcgataccaatgcgattaccgatgtggcgcaatggacggtgtcc
gatacccgtcgctgggtggacggtttgcgcctgaaggggcgcgatgccgagatcgcgcgc
gacgtggtgacggagatcgccagccgcttgcagttcctggaggaggtggggctcggttac
ctgagcctggaccgtgccgcgccgagcctgtctggcggcgaggcccagcgtatccgcctg
gccgcgcagctcggcagcaatctgcagggcgtttgctacgtgctcgatgagccgacgatc
ggcctgcatccgcgcgacaaccagattctgctcgatgccttgcgcaagctcggcgacaag
ggcaatacgctggtggtggtggagcacgacgaagacacaatccgtcgcgccgatcacatc
atcgacatcggcccgggcgcaggcaagcgcggtggcagccttgtggcgcagggcggcgtg
gaagcgctggcggcggccaaggattcgaccaccgggcagttcctggcccatccgatgatc
catccgctgcaggcgcgccgtccggtcacacccgcgcgcgcgggcaagcccgcggatccg
ccgcaatggctgaccgtccacggtgccaacctgcacaacctgcgcgatgtcaccgcgcgg
attccgttgacgcggttggtgacgattaccggggtgtccgggtccggcaagtcgacgctg
gcgcgtgatgtgctgatgacgaacctgctcgacgccgtcgggcgatcggtgatgtcctcg
ccggccacgcgccgcgctcgggccgtggccgagaaggccggcaagccgacggcgaccaag
tcgctcagcgtggagcacgcgtggcatggctgcgagtcgatcagtggctgggaatcgatc
gaccgtgtgctcgaagtcgatcagaccccgatcggcaagacgccgcgctcctgtccggcg
acctatatcggtgtgtgggacgccatccgcaagatgttcgcggaaacgctcgaagccaag
gcgcgcggttatagcgcgtcgcggttctcgttcaataccggcgagggccgctgcccggcg
tgcgagggccagggcgttcggacgatcggcatgagtttcctgccggacgtgaaggtgcca
tgcgatgtctgccatgggcagcgattcaacccggaaacgctggcggtgacctggcgtggc
aagaatatcggcgaagtgctgacgatggagatcgacgaggcggtggagtttttctcggcc
accacgcagatcgcgcatccgctgcaactgatgaaggatgtcgggctgggctacctgacg
ctgggccagccgtcgcccacgttatcgggcggtgaggcgcagcgcatcaagctagtcacc
gaactgtcgaaggtccgtgacgacatcacgcgccgcggccagaaagcgccacatacgctg
tatgtgctagacgaaccgacggtgggcctgcatatggcggacgtggcgcgcctgatcaag
gtgctgcatcgcctgaccgatggcgggcacagcgtggtggtgatcgagcacgatcttgac
gtgatcgccgaggccgactggattatcgacctcgggccggaaggtggcgcgaatggcggc
acgatcgttggcgcggcggatcccgaggcattgtcccgcattcgggccagccacaccggc
gcggcgctggtgccggtgctggcacgcgctgcgcagggtagcgaaagggcgacgggctga
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