Rothia mucilaginosa: RMDY18_02680
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Entry
RMDY18_02680 CDS
T01144
Name
(GenBank) superfamily I DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rmu
Rothia mucilaginosa
Pathway
rmu03420
Nucleotide excision repair
rmu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RMDY18_02680
03430 Mismatch repair
RMDY18_02680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmu03400
]
RMDY18_02680
Enzymes [BR:
rmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RMDY18_02680
DNA repair and recombination proteins [BR:
rmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RMDY18_02680
MMR (mismatch excision repair)
Other MMR factors
RMDY18_02680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_11
AAA_30
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAI64100
UniProt:
D2NR24
LinkDB
All DBs
Position
278151..281108
Genome browser
AA seq
985 aa
AA seq
DB search
MMSDKPEQQKQPFTEQDGLFAAELVTPAAPDDEPPFDPYYDVPPAEDDYYAPAMDAPMVE
APAQDVPVALPTGMPAYGAPATSAPVPVPGAPAAFTTADPLGDFMPPAYRVGGYGEDFDP
ADPYGERTHSLNAVDPASLTAGLNERQEEAVLHSGSPLLIVAGAGSGKTRVLTHRIAYLL
ATHRATPGQILAITFTNKAAAEMRERIEALVGPRAKHMWISTFHSFCVRVLRREAAALGL
KSTFTIYDSTDSQRLLSLIIKELNLDTKKFTAKAVGNRISALKNELVSAEAYASRVASDN
PYEKTIAQIYTVYTQRLRAANSLDFDDLIGRTVFLLKKFPEIANYYRRKFRHILVDEYQD
TNHAQYQLVRELVGAHVKAPADRGPYPDAVPPAELTVVGDSDQSIYAFRGADIRNITDFE
KDYPNAHTILLEQNYRSTQNILSAANAVIERNPDRRPKKLWTASGAGAKIIGYVAESEHA
EARFITREIDRLADEHGVQPGDVAIFYRTNAQSRTLEDMLMRAGLPYRVVGGTRFYERKE
IKDALAYLRALSNPDDDVNVRRILNEPKRGIGAKSESVVADYATAHRISFFAAARQAADV
PGLGAAAVKKYAEFVRLMDDLAQIARTEPAATCLEAVLEQTGYLAALRASKDIQDESRVE
NLSELLDAMVEFETENPGADLEQFLEHVALVADADSIPNRPASAEGESASAAQIAAEAAE
AKAQGMVTLMTLHTAKGLEFPVVFLTGMEHGLFPHQRALTDEKEMSEERRLAYVGLTRAM
ERLYLTRSETRTMWGKSQFNPPSPFLEEIPEELIEWKRTAGFSGFGASGMGAYGARGGSS
YGGSSYGGGYGSGYSGGSRSGYSSGYGSGGYSGGYGSGSYSSRGSYDPYESRPARRSEPS
TADINGSASYGLAAAASSKVTNRSRVHQSKEIPTLAVGDTVRHTKFGEGRVLAVEGSGDK
TVAKVRFGSEEKRLLLRYAPLEKVS
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcgacaagcccgaacagcagaagcagcccttcaccgaacaggacggcctgttc
gccgccgaactcgtcacccccgcagcaccggatgacgagccgcccttcgacccctactac
gacgtaccccctgccgaggacgactactacgcccctgccatggatgccccgatggtggag
gcgcccgcacaggacgtacccgtcgccctgcccaccggcatgcccgcctacggtgcccct
gctaccagtgcgcccgttcctgtacccggcgcacccgcagccttcaccaccgcagacccg
ctcggtgacttcatgccgcccgcctaccgcgtcggcggttacggcgaggacttcgatccc
gccgacccctacggcgaacgcacccacagcctcaacgctgttgaccccgcctccctcacc
gcggggctcaacgaacgccaggaagaggccgtactgcactccggctcgcccctgctcatc
gtcgcgggtgcgggctccggcaagacccgcgtgctgacccaccgcatcgcctacctgctc
gcaacccaccgcgcgacccccggccagattctcgccatcaccttcaccaacaaggctgcc
gccgaaatgcgtgaacgtatcgaggcgctggtcggcccgcgcgccaagcacatgtggatt
tctactttccacagcttctgcgtgcgtgtgctgcgccgtgaggccgccgccctggggctg
aagtccaccttcaccatctacgattcgaccgactcgcagcgcctgctgagcctcatcatt
aaagagctcaacctggacaccaagaagttcaccgctaaggccgtgggcaaccgcatctcc
gcgctgaagaacgagctggtcagcgccgaggcgtacgcatcccgcgtggctagcgataac
ccgtacgagaagaccatcgcgcagatttacaccgtctacacgcagcgtctgcgcgccgct
aactccctcgactttgacgacctgattggccgcaccgtctttttgctcaagaagttcccc
gaaatcgcgaactactaccgccgtaagttccgccacatcctcgtggacgagtatcaggac
accaaccacgcccagtaccagctcgtgcgcgagctggtcggcgcccacgtgaaggcgccg
gctgaccgcggcccctacccggacgccgtgccccctgccgagctgaccgtggtgggtgac
tccgaccagtccatctacgccttccgcggcgcggatatccgcaatattacggacttcgag
aaggactacccgaacgcccacacgatcctgctcgagcagaactaccgttccacgcagaac
atcctttcggcggcgaacgcggtcatcgaacgcaaccccgaccgtcgccccaagaagctg
tggaccgcctccggcgcgggcgcgaagattatcggttacgtcgccgaatccgagcacgcc
gaggcacgcttcatcacccgtgaaattgaccgcctggcggacgagcacggcgtgcagccc
ggtgacgtcgcaatcttctaccgtaccaacgcgcagtcccgaaccctcgaggacatgctc
atgcgtgccggcctgccctaccgcgtggtcggtggcacccgcttctacgagcgtaaggaa
atcaaggatgcgctcgcctacctgcgtgccctgagcaaccccgatgacgacgtgaacgtg
cgccgtattctgaacgaacccaagcgcggtatcggtgccaagtccgagtccgtggtggcc
gattacgcgaccgctcaccgcatctcgttctttgcggcggctcgtcaggccgccgatgtc
ccgggtctgggcgccgccgcggtcaagaagtacgccgagttcgtgcgcctcatggatgac
ctggcgcaaattgcccgcaccgaaccggccgcaacctgcctggaggcggtcctggagcag
accggctacctggcggctctgcgcgcctccaaggacattcaggacgagtctcgcgtagag
aacctctccgagctgcttgacgccatggtcgagttcgagaccgagaaccccggcgccgac
ctcgaacagttcctcgagcacgtggcgctggttgccgacgccgactcgattccaaaccgc
cccgccagcgcggagggtgagagtgcatccgctgcgcagattgccgccgaggcggccgag
gcgaaggcccagggcatggttaccctcatgaccctgcacaccgccaagggcctggagttc
cccgtggtgttcctgaccggcatggagcacggcctgttcccacaccagcgcgccctgacc
gacgagaaggagatgagcgaggagcgccgcctggcgtacgtgggtctgacccgcgccatg
gagcgcctgtacctgacccgctccgagacccgcacgatgtggggtaagagccagttcaac
ccgccctcgcccttcctggaagaaatcccggaggagcttatcgagtggaagcgcaccgcc
ggtttctcaggctttggtgcctccggcatgggtgcgtacggcgctcgcggcggcagttcc
tatggaggaagctcctacggtggtggctacggcagcggttactccggcggttcgcgctcc
ggatacagctccggctacggttccggcggctactcgggtggttacggctccggcagctat
agctcgcgcggctcgtacgacccctacgagtcccgccccgcacgtcgttccgagccgtcc
accgcggacattaacggctcggcaagctacgggctggcggctgccgcctcctcaaaggtg
acgaaccgttcccgcgtgcatcagagcaaggaaatcccgaccctggcggtcggcgatacc
gtgcgccacaccaagtttggtgagggccgcgtgctcgccgttgagggtagcggcgataag
accgtggcgaaggtccgtttcggttcggaagagaagcgcctgctgctgcgttacgcgccg
ctggagaaggtgagctaa
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