Rothia mucilaginosa: RMDY18_08970
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Entry
RMDY18_08970 CDS
T01144
Name
(GenBank) ribonuclease G and E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rmu
Rothia mucilaginosa
Pathway
rmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RMDY18_08970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmu03019
]
RMDY18_08970
03009 Ribosome biogenesis [BR:
rmu03009
]
RMDY18_08970
Enzymes [BR:
rmu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RMDY18_08970
Messenger RNA biogenesis [BR:
rmu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RMDY18_08970
Ribosome biogenesis [BR:
rmu03009
]
Prokaryotic type
rRNA processing factors
RMDY18_08970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
BAI64729
UniProt:
D2NSV3
LinkDB
All DBs
Position
978276..982142
Genome browser
AA seq
1288 aa
AA seq
DB search
MTATRLCAVCALLKSLRCGAGCNERRLMSDEKNVELGVFEALNALAEEKNASAETRETLR
KNVRESSDAQQGTERRRPGRPKKEKAPEVPLDEAIAAGLTNLRNAKAKHAPAPKVAAPAT
SETEVASTLDSLFEAAEKKAAEPAVVENTAKVETVEKTAKVEEVVAPAAESVEPVAEKKA
AEPAAESAVEAKEETAKVEVVTSAPAEKAEAPAEEPAAEQPAEAAAAVEESATEEAALKA
PAVEESAEEPEVAPEPVKTISDLQREKLQELRSRTPMGAMPLFMAPEPEELSELAVAAKL
EREARRAAAEEQKRKERMERRREEAAAEAEVTSHRRRRRRRGTEDIEIEGGVDDDVETVT
KVRAPRLADSHASNTVTGVRGSTRLEAKRVRRRESRSLGRRRHIVTEAEFLARRESVDRQ
MLVRQKDGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGR
NAVLYAGEVNWDVTGLDGAPRKIENALKPGDSVLVQVTKDPIGHKGARLTSQVSLPGRFL
VYVPGGSMTGISRKLPDTERARLKKILKDKLPEGAGVIVRTAAEGASEEELTHDINRLRA
QWEEIQEKAKSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIEAYVTYV
APDLVSRLQQWDGDDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK
FTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECL
GRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEPCEHCAGRGLVVHDQPLSGRSGGAS
DYIHRHERNDRKRSRAAAREDSRDQQKQDALESKKAERRNAMAAVAAASAHSEEASEETA
STRKKRKRRKRSRRAETAELSLEQEIQGIAEAASEQAHAEVAQREDKVAEVTEGNWIGEQ
GGFSLEQLASAFDRVEEESAEGSSKDSAEERSDQERAEERRSSKRGEKKSSRNRKRRELT
DADIAAVEDSGAGALEDEHHVDPELDPRFSRSSDRFEAIRAGEAKARASQKAGRLARAEG
ESFRSGREDRSAKRQNAEQKGAEATSAEVNSGVQKAQESKRVEREDLRIEDVRETPRASR
RRARRAADEKRAEKSAEQSVASEQAPAKADKIEKSESRPVVTGVISAPAVTGVVGAAPAA
VEAPVEDQTPAAQVPGSTPRKRRTRRAASSAGAGAQVVTVDASERAEGSVVASASVADVA
PVADDASAPVLFGIGVAAADIKREGKDD
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
gtgacagcaactaggctttgcgctgtatgcgcgctgttaaaatccttgcggtgcggagca
gggtgtaacgaaagaagattaatgtctgacgagaagaacgtcgaacttggggtttttgag
gcgctgaatgccctcgcggaggagaagaacgcctctgcagagacccgtgaaactctgcgt
aagaatgttcgtgagagctctgacgcccagcagggtactgagcgccgccgtccgggtcgc
ccgaagaaggagaaggctcctgaggttcccctggatgaggcgattgctgctggcctgacc
aacctgcgtaacgctaaggctaagcacgcgccggcaccgaaggttgccgctcccgctacg
tctgagaccgaggtcgcttctaccctcgatagcctgtttgaggctgctgagaagaaggct
gctgagcctgctgtcgtggagaacaccgcgaaggttgagaccgttgagaagaccgctaag
gtggaggaagttgttgcccccgccgctgagtctgttgagccggttgctgagaagaaggcg
gctgagcccgctgccgagtctgccgttgaggcgaaggaagagaccgccaaggttgaggtc
gtaacctccgcaccggctgagaaggctgaagctcccgctgaagagcctgccgcagagcag
cccgccgaggctgctgcagctgttgaggaatccgcaaccgaagaggctgcactcaaggca
cccgcagtagaagagtctgctgaggagcctgaagtagctcccgagccggtaaagaccatt
agcgacctgcagcgcgagaagctgcaggagctgcgctcgcgtaccccgatgggtgcgatg
ccgctgttcatggcgcccgagccggaggagctgagcgagcttgctgttgccgccaagctg
gagcgtgaagcacgccgcgccgctgctgaggagcagaagcgtaaggagcgcatggagcgc
cgccgtgaggaggctgccgctgaggctgaggtgacgagccaccgtcgccgtcgccgtcgc
cgcggtaccgaagatattgagattgagggcggcgttgatgatgacgttgagaccgtcacc
aaggtgcgtgcaccgcgcctggctgactctcacgcatccaacactgtgaccggtgtgcgc
ggttctacccgcctggaggcgaagcgtgtgcgccgccgcgagtcccgctccctgggtcgc
cgccgccacatcgtgactgaggctgagttcctggctcgccgcgagtctgtggaccggcag
atgctggttcgtcagaaggacggccgcatccagattggtgtgcttgaggacggcgtgctg
gctgagcacttcgtgtctaagacccagcaggattcgctgattggcaacgtatacctgggt
aaggttcagaacgtcctgccgtccatggaagctgcgttcgttgacattggacgcggccgc
aacgctgtgctgtacgcgggcgaggtcaactgggatgtcaccggtctggacggtgcgccc
cgcaagattgagaacgccctgaagcccggtgattcggttctggtgcaggtcaccaaggac
ccgatcggtcacaagggtgcccgcctgaccagccaggtttctctgcccggccgcttcctg
gtgtatgtgccgggtggttcgatgaccggtatttcccgtaagctgcccgacaccgagcgt
gctcgcctgaagaagattctgaaggacaagctgcccgagggtgctggcgtgattgttcgt
accgcggcggagggtgcttctgaggaggagctgacccacgacattaaccgtctgcgtgcg
cagtgggaagagattcaggagaaggctaaatcccgcaaggtgctggctccggagatgctc
taccaggagcccgacctgatgattaagaccgtgcgtgacgtcttcaacgaggacttcacc
gcgatgatcgttcagggcgagaacgcgtgggattccatcgaggcgtacgtgacgtacgtg
gcgccggacctggtctcccgcctgcagcagtgggacggcgatgacgacctcttcgaccac
taccgcatcaacgagcagctggcgaaggcactggaccgtaaggtgtacctgccttcgggt
ggttcgctggtgattgaccgtaccgaagccatgaccgtggtggatgtgaacaccggtaag
ttcaccggtagcggcggcaaccttgaagagactgtcaccaagaacaacctggaagctgct
gaggagattgtccgtcagctgcgtctgcgcgatatcggcggcattatcgtcattgacttc
attgacatggtgcttgagtcgaaccgtgacctggttctgcgtcgcctgattgagtgcctg
ggccgtgaccgtaccaagcatcaggtggctgaggtgacttcgctgggtctggttcagatg
acccgtaagcgcctgggtaccggtctgcttgaggtcttctcggagccctgtgagcactgc
gccggtcgtggcctggtggttcacgatcagccgctgagcggtcgtagcggtggcgcgtcg
gattacattcaccgccatgagcgtaatgaccgtaagcgtagccgtgccgctgcccgcgag
gattctcgtgaccagcagaagcaggatgctctggagtcgaagaaggctgagcgccgtaac
gctatggctgcggtggctgccgcatccgctcacagtgaggaagcttcggaggagactgct
tcgacccgcaagaagcgtaagcgtcgcaagcgttcgcgccgcgcggagaccgctgagctg
tcgcttgagcaggaaattcagggtattgccgaggctgccagcgagcaggcccacgcggag
gttgctcagcgtgaggacaaggtcgctgaggtcaccgagggcaactggatcggtgagcag
ggcggtttctccctggaacagctggcaagcgcgttcgaccgcgtggaggaggagtccgct
gagggttcctcgaaggactctgctgaggagcgttctgatcaggagcgtgcggaggagcgt
cgttcgtccaagcgtggcgagaagaagtcttctcgtaaccgtaagcgccgcgagctgacc
gatgcggatatcgccgctgtggaggattccggcgcgggtgcgctggaggatgagcaccac
gttgacccggagctcgacccgcgctttagccgctcttcggatcgttttgaggcgattcgt
gctggtgaggcgaaggctcgtgcttctcagaaggctggccgtcttgcccgcgccgagggt
gagtcgttccgttcgggccgcgaggatcgttcggcgaagcgccagaacgctgagcagaag
ggcgctgaggcaacctccgctgaggtaaactcgggtgtgcagaaggctcaggagtccaag
cgtgttgagcgtgaggacctgcgcattgaggatgttcgtgagaccccgcgtgcgtcccgc
cgccgtgctcgtcgcgccgctgatgagaagcgcgccgagaagtcagctgagcagagcgtg
gcatccgagcaggcacccgcaaaggctgataagattgagaagtctgagtctcgcccggtt
gtgaccggcgtgattagtgctccggctgtgaccggtgtggtgggcgcagctcccgcagcg
gttgaggctccggttgaggatcagacgcctgcggctcaggtgcccggttcgaccccgcgt
aagcgtcgcactcgccgtgcggcttcgagcgccggtgccggtgctcaggtcgtgaccgtg
gacgcttccgagcgtgctgagggttccgtggttgcttccgcttctgttgcggatgtggct
ccggtggctgatgacgcttcggcccctgtcttgttcggcattggcgttgccgctgccgac
attaagcgtgaaggtaaggacgattag
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