Rattus norvegicus (rat): 25412
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Entry
25412 CDS
T01003
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform 2 precursor
KO
K19719
collagen type II alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04151
PI3K-Akt signaling pathway
rno04510
Focal adhesion
rno04512
ECM-receptor interaction
rno04974
Protein digestion and absorption
rno05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
25412 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
25412 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
25412 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
25412 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
25412 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
25412 (Col2a1)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
25412 (Col2a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
25412
NCBI-ProteinID:
NP_037061
RGD:
2375
Ensembl:
ENSRNOG00000058560
UniProt:
P05539
LinkDB
All DBs
Position
7:complement(130977561..131006627)
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AA seq
1419 aa
AA seq
DB search
MIRLGAPQSLVLLTLLIATVLQCQGQDARKLGPKGQKGEPGDIKDIIGPKGPPGPQGPAG
EQGPRGDRGDKGERGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGGNFAAQMAGGFD
EKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPA
GKPGDDGEAGKPGKAGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK
GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP
GAPGAKGEAGPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGIA
GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEE
GKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDP
GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPK
GANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQGLP
GPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD
GPKGAAGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT
GPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAK
GDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP
GSNGNPGPAGPPGPAGKDGPKGARGDTGAPGRAGDPGLQGPAGAPGEKGEPGDDGPSGSD
GPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLT
GPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDR
GEAGAQGPMGPSGPAGARGIAGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPS
GDQGTSGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGPPGNPGPP
GPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEADSTLRQHDVEVDATLKSLNNQIES
IRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNP
ATVPRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLLSTEGSQN
ITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTKHTGKWGKT
IIEYRSQKTSRLPIVDIAPMDIGGPDQEFGVDIGPVCFL
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagtcgctggtgctgctgacgctgctcatcgccacggtc
ctacaatgtcagggccaggatgcccgaaaattagggccaaaggggcagaaaggagaacct
ggagatatcaaagatatcataggacctaaaggacctcctggccctcagggacctgccggt
gaacaaggacccagaggtgaccgtggtgacaagggagagaggggtgcacctggaccccgt
ggcagagatggagaacctggtacccctggaaatcctggtccccctggccctccaggcccc
cctggtccccctggccttggtggaggaaactttgcagcccagatggctggaggatttgac
gagaaggctggtggtgcccagatgggagtcatgcaaggccccatgggccccatgggacct
cgtggacccccaggccccgccggtgcccccggccctcaaggatttcaaggcaatcctggt
gaacctggcgagcctggtgtctctggtcccatgggtccccgaggtcctccaggtcctgct
ggaaaacctggtgatgatggtgaagctggaaagcccggaaaggccggagaaagaggcctc
cctggtcctcagggtgctcgtggattcccgggaacccccggtcttcctggtgtcaagggt
cacagaggttacccaggcctcgatggtgctaagggagaagctggtgctccaggtgtgaag
ggtgagagcggttcccctggtgagaacggatccccaggcccaatgggtccccgtggcctg
cctggcgagagaggacggactggccctgctggtgctgctggtgctcgaggcaacgacggc
cagccaggccctgctggacctccgggtcctgttggtcctgcaggtggtcctggcttccct
ggtgctcctggtgccaagggcgaagctggtcccactggtgcccgtggtcctgaaggtgct
caaggttctcgtggcgaacccggcaatcccggatcccccgggcccgcaggcgcttctggt
aacccagggactgatggtattcccggagccaaaggatctgctggcgctcctggaattgct
ggtgcccctggcttccctgggccccgtggccctcccggtcctcaaggtgcaactggtcct
ctgggccccaaaggtcagacgggtgagcccggcatcgctggcttcaaaggtgaacaaggc
cccaagggagagactggacctgctgggccccagggagcccctggccctgctggtgaagaa
ggaaaacgaggtgctcgaggagagcccggtggcgctggacctatcggcccccctggagag
agaggtgctcctggcaaccgtggtttcccaggtcaagatggtctggcaggtcccaagggt
gcccctggagagcgagggcctagtggcctggctggtcctaagggtgccaatggtgacccg
ggtcgtcctggagaacctggtcttcctggagccaggggtcttactggccgccctggtgat
gctggtcctcaaggcaaagttggtccttctggagcccctggagaagacggtcgccctggt
cctcctggtcctcagggagctcgtgggcagcctggcgtcatgggtttccctggccccaaa
ggagccaatggcgagcctggcaaagctggtgagaaaggactggctggtgctcctggtctg
agaggtcttcctggcaaagatggtgagacaggagccgcaggaccccccggccccagcgga
cctgctggtgaacgaggcgagcagggtgctcctgggccatcagggttccagggacttcct
ggccctcctggtcccccgggtgaaggtggaaagcaaggtgaccagggtattcctggtgaa
gctggagcccctggcctcgttggtccccggggtgaacgaggtttcccaggtgaacgtggc
tctcccggtgctcagggcctccagggtccccgaggcctccctggcactcctggtactgat
ggtcccaaaggtgcggctggcccagatggtccccctggggctcagggccctccaggtcta
cagggaatgcctggtgagaggggagcagctggtattgctggacccaagggagacagaggt
gatgttggcgagaaaggcccagagggagctcctggaaaagatggtggccgaggtcttact
gggcccatcgggcccccaggaccagcaggtgccaatggcgagaagggagaagtcggacct
cctggtccttcaggaagtactggagctcgaggcgccccgggtgagcgcggagagactggg
ccacctggacctgctggattcgctggccctcctggtgctgatggccagcctggtgccaag
ggcgatcaaggagaagctggacagaaaggtgacgctggtgcccctggcccacaaggcccc
tcaggagctcccgggccacagggtcctactggagtgactggtcctaagggagcccggggc
gcccaaggcccaccgggagccaccggattccctggagctgctggccgagttggaccccca
ggttctaatggcaaccctgggcccgccggtccccctggtcctgctggaaaagatggtccc
aaaggtgctcgaggagacactggtgcccctggcagagctggtgaccctggacttcaagga
cccgcaggagctcctggagagaaaggcgaacctggagatgacggtccctctggttctgat
ggtcccccaggtccccaggggctggctggtcaaaggggcattgttggtctgcctggtcag
cgtggtgagagaggattcccaggccttcccggcccatcgggtgagcccggcaagcagggt
gcacctggtgcatctggagacagaggtcctcctggtcctgtggggcctcctggcttgaca
ggacctgcaggtgaacctggacgagagggcagccctggtgctgatggaccccctggcaga
gatggtgcggctggagtcaagggtgatcgtggtgagactggtgcacttggtgctcctgga
gctcctgggcccccaggctctcctggtcctgctggcccaactggcaaacaaggagacaga
ggagaggctggtgcacaaggtcctatgggcccctcaggacctgctggagcccgtggaatt
gctggccctcaaggcccccgaggtgacaaaggagaagctggagagcctggcgagagagga
ctgaaggggcaccgaggtttcactggactgcagggtctgcctggccccccgggtccttct
ggagatcagggtacttctggccctgctggtccttccggccctagaggtccacctggccct
gttggtccctctggcaaagatggctctaatggaatccctggccccatcgggcctccaggt
ccccgtggacgctcaggagaaactggccctgctggtcctcctggaaatcctggtccccct
ggccctccgggtcctcctggtcctggcatcgacatgtcagcctttgctggcttaggacag
agagagaagggccccgatcccctgcagtacatgcgggccgacgaggcagacagtaccttg
agacagcatgacgtcgaggtggacgccacgctcaagtcgctgaacaaccagatcgagagc
atccgcagccctgatggctcccgcaagaatcccgctcgcacctgccaggacctgaaactc
tgccacccagagtggaagagcggagactactggattgatcccaaccagggctgcaccttg
gacgccatgaaagtcttctgcaacatggagactggcgagacttgcgtctaccccaaccca
gcgactgtgcctcggaagaactggtggagcagcaagagcaaggagaagaagcacatctgg
tttggagagaccatgaacggcggcttccacttcagctacggcgacggcaacctggctccc
aacaccgctaacgtccagatgactttcctccgtctactgtccactgagggctcccagaac
atcacctaccactgtaagaacagcattgcctacctggacgaagcagccggcaacctcaag
aaggccttgctcatccagggctccaatgatgtggagatgagggccgagggcaacagcagg
ttcacgtacactgccctgaaggatggctgcacgaaacacaccggtaagtggggcaagacc
atcatcgagtaccgatcacagaagacctcacgccttcccattgttgacattgcacccatg
gacatcggagggcctgatcaggaatttggtgtggacatagggcctgtctgtttcttgtaa
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integrated database retrieval system