Rhodococcus opacus PD630: Pd630_LPD01465
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Entry
Pd630_LPD01465 CDS
T03071
Name
(GenBank) putative DNA repair helicase RAD25
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Pd630_LPD01465
09124 Replication and repair
03420 Nucleotide excision repair
Pd630_LPD01465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roa03021
]
Pd630_LPD01465
03400 DNA repair and recombination proteins [BR:
roa03400
]
Pd630_LPD01465
Enzymes [BR:
roa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pd630_LPD01465
Transcription machinery [BR:
roa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Pd630_LPD01465
DNA repair and recombination proteins [BR:
roa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Pd630_LPD01465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
AHK28694
LinkDB
All DBs
Position
complement(1491252..1492931)
Genome browser
AA seq
559 aa
AA seq
DB search
MTDGPLIVQSDKTLLLEVDHERANDARQAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALVNFSRYAVPQPLLVDIVDTMARYGRLQLVKNPAHGLTLVSLDRAVLTEVT
RHKKIAPMLGARVDDDTVVVHPSERGRLKQLLLKVGWPAEDLAGYVDGEAHAIDLDFDGT
SPGSADGQWHLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNT
VAGRQWKRELIARTSLTEEEIGEYSGERKEIRPVTIATYQVITRRTKGEYKHLELFDSRD
WGLVIYDEVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD
IEAQGWIAPADCVEVRVTLTDAERMSYAVAEPDERYKLCSTAHTKIAVVKSILERHTDAP
TLIIGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAGEIQTLVVSKVANFSIDLP
EASVAVQVSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVARDTLDAEYAAHRQRFLAE
QGYAYRITDADDLLGPAIG
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacggaccgttgatcgtccaatccgacaagaccctgctgttggaggtcgatcac
gaacgcgcgaacgacgcccgccaggcgatcgcgccgttcgcggaactcgagcgcgcgccc
gagcacgtccacacctaccggatcaccccgctggccctgtggaacgcgcgcgccgccgga
cacgacgccgagcaggtggtcgatgcgctggtcaacttctcccggtacgcggtgccccag
ccgctgctggtcgacatcgtcgacacgatggcccggtacgggcggctgcagctggtgaag
aacccggcccacggtctgacgctggtcagcctggaccgcgcggtcctcaccgaggtgacc
cggcacaagaagatcgccccgatgctcggtgcccgcgtcgacgacgacaccgtcgtggtc
cacccgagcgagcgcggccgtctcaagcagttgctgctcaaggtcggctggccggcggag
gacctcgccgggtacgtcgacggcgaggcgcacgccatcgacctggacttcgacggcacg
tcccccgggtccgcggacggccagtggcacctgcgtgactatcaggagatggccgccgac
tcgttctgggcgggcgggtccggcgtcgtggtcctgccctgtggtgcgggtaagaccatg
gtcggtgcggcggcgatggccaaggcgaaggccaccacgttgatcctggtgacgaatacg
gtcgcgggacggcagtggaagcgtgagctgatcgcgcgcacgtcgctcaccgaggaggag
atcggcgagtactcgggcgagcgcaaggagatccggccggtcacgatcgccacgtaccag
gtgatcacccggcgcaccaagggcgaatacaagcatctggaactgttcgattcccgcgac
tggggtctcgtgatctacgacgaggtgcacctcctgcccgccccggtcttccgcatgacc
gccgacctgcagtcccgtcgacgcctcggcctcaccgccaccctggtgcgcgaggacggc
cgcgagggcgacgtgttctcgctgatcggacccaagcggtacgacgcgccgtggaaggac
atcgaggcgcaggggtggatcgcgcccgccgactgcgtcgaggtgcgggtgacgctgacg
gacgccgaacggatgtcctacgccgtcgccgaacccgacgaacggtacaagctgtgttcc
accgcacacaccaagatcgcggtggtgaagtcgatcctggaacggcacaccgacgcaccg
acgttgatcatcggcgcgtacctcgaccagctcgacgaactgggtgaggcgttgaacgca
ccggtcatcaaggggtcgaccaagaacaaggagcgggaggaactgttcgaccgtttccgg
gcgggcgagatccagacgctggtcgtcagcaaggtcgcgaacttctcgatcgacctgccg
gaagcatctgtcgccgtccaggtttcgggtacgttcggttcccgccaggaggaggctcag
cggctgggccgcctgctgcgacccaagcacgacggcggccaggcccacttctactcggtg
gtggcccgcgacacgctcgacgccgagtacgccgcccaccggcagcgcttcctcgccgag
caggggtacgcgtaccggatcaccgacgccgacgacctgctgggcccggccatcgggtaa
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