Rhodococcus opacus PD630: Pd630_LPD05222
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Entry
Pd630_LPD05222 CDS
T03071
Name
(GenBank) Uncharacterized protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03030
DNA replication
roa03430
Mismatch repair
roa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pd630_LPD05222
03430 Mismatch repair
Pd630_LPD05222
03440 Homologous recombination
Pd630_LPD05222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
roa03032
]
Pd630_LPD05222
03400 DNA repair and recombination proteins [BR:
roa03400
]
Pd630_LPD05222
Enzymes [BR:
roa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pd630_LPD05222
DNA replication proteins [BR:
roa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pd630_LPD05222
DNA repair and recombination proteins [BR:
roa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pd630_LPD05222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
AHK32428
LinkDB
All DBs
Position
5410921..5412687
Genome browser
AA seq
588 aa
AA seq
DB search
MSAPGVPEQLRFDELDTPLRDTTFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAEMAT
LVDPGRSIPPHIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLIAHNAPFDTGFLKAA
ASATDTPWPKFTVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVD
VLHALIARVGNQGVHSLTELVDYLPDVSSHQRAKRSLAGHLPHAPGVYLFRGPSDEVLYV
GTATDLRRRVRNYFTGSETRGRMKEMVALTTRIDHVECAHALEAGVRELRLLAAHTPPYN
RRSKYPKRGWWITLTAEAFPRLSVARTPTADSLGPFRSRSTAVDVADVLAEYCILRTCTS
RIPKGREHGPQCPPRELGRCPASVHDRVTEDAYRPGPELFRQFLRGLDDSPLHRMRARVE
ELAAGELFENAARLRDRTAEVVLALRRMQRLAALTALDQLVAARPAVTGGWEFAVIRSGR
LASAGCARRGIHPMPVVDALVLTAETVVPDATPLRGASPEEAGLLARWLDQEDTRIVSAS
AGWCEPARGAGSWSEWCALARAGSASTREAETRPPAPSSADHRLGWRS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgcccccggtgtacccgaacagctgagattcgacgagctcgacaccccactgcgg
gacaccacgttcgtggtggtcgatctcgagaccaccggcgcacggccgggcgaggacgcc
atcaccgagatcggcgccgtgaagatccgcggcggcgaggtgatcgccgaaatggccact
ctcgtcgacccgggacggtccatcccgccgcacatcgtggagatcaccggcatcaccacc
gccatggtgatcgacgccccgcggatcgagcgagtgctgccggcgttcctggagttcgca
cgcggggccgtgctcatcgcccacaacgccccgttcgacacgggcttcctcaaggccgcg
gcgtccgccaccgacaccccctggcccaagttcaccgtgctctgcaccgtcaaactggcc
cggcgcgtcctcagccgcgacgaagcgccgtccgtcaagctgtcgtcgctggcccggctg
ttcgacgtcgggaccactccgacccaccgggcgctcgacgacgcccgtgccaccgtcgac
gtcctgcacgccctcatcgcgagggtcggcaatcagggagtgcacagtctcaccgaactc
gtcgactacctgcccgacgtctcctcacaccagcgggcgaaacgctcactcgccggccat
ctcccccacgcccccggcgtctacctgttccgcggaccgtccgacgaggtcctctacgtc
ggcacggcgaccgatctgcgccggcgggtgcgcaactacttcaccggctccgagacgcgc
ggccggatgaaggagatggtggccctgaccacccggatcgaccatgtcgagtgcgcgcat
gcgctcgaggccggtgtgcgcgagctccggctgctcgccgcgcatacgccgccgtacaac
cggaggtccaagtacccgaaacgcggctggtggatcacgctcaccgcggaggccttcccc
cggctgtcggtggcgcgtaccccgaccgccgactcgctcggtccgttccggtcccgctcg
accgccgtcgacgtcgccgacgtcctcgccgagtactgcattctccgcacctgcacgagc
cgcatcccgaagggaagggagcacggtccgcagtgcccgccccgcgagctcggacgctgc
ccggcgtccgtccacgaccgcgtcacggaggacgcctaccgtcccgggccggaactcttc
cggcagttcctgcgcggcctggacgactccccgctgcaccgcatgcgcgcacgggtggag
gagctggccgccggcgagttgttcgagaacgccgcacgcctgcgtgatcgcaccgcggag
gtcgtcctcgcgttgcgcagaatgcagcgcctggccgccctcaccgccctcgatcagctc
gtggccgctcgcccggccgtcaccggcggctgggagttcgcggtgatccgttccgggcga
ctcgcgtccgcgggctgcgcccggcgcggaatccatccgatgccggtggtcgatgcgctc
gtcctcaccgccgaaaccgtcgttcccgacgcaactccgcttcgcggcgcgtcccccgag
gaggccggactgctggcgcgctggctcgaccaggaggacacccgcatcgtcagcgcctcc
gcgggctggtgcgagcccgcgcggggcgccggatcctggtccgagtggtgcgcactcgcc
cgagcggggagcgcgtcgacacgggaagccgagacccgaccacccgcgccgagttccgcc
gaccaccgcttaggctggcgatcatga
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