Roseovarius sp. THAF27: FIU89_10455
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Entry
FIU89_10455 CDS
T06352
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
roh
Roseovarius sp. THAF27
Pathway
roh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
roh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FIU89_10455 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roh03400
]
FIU89_10455 (mfd)
Enzymes [BR:
roh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIU89_10455 (mfd)
DNA repair and recombination proteins [BR:
roh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FIU89_10455 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_16
AAA_30
SecA_DEAD
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QFT81031
UniProt:
A0A5P9GYV5
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All DBs
Position
complement(2092919..2096365)
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AA seq
1148 aa
AA seq
DB search
MAGSTRIAVGGAPEGFDAKLILDEAARAKGPVIHVARDDKRMAAMEEALRFFAPDMPVIR
FPGWDCLPYDRVSPNADIAATRMATLAGLVHGGPSRFILLTTLNAATQRVPAREVLREAA
FSAQVDYQIDEEALKSFLVRMGFTQAPTVMEPGDYAVRGGIIDIYPPGESGPVRLDLFGD
VLDGVRRFDPATQRTTEKLDRIELAPVSEVILDEAAITRFRQNYRIEFGAAGSDDPLYEA
VSAGRKQAGMEHWLPLFHERLETLFDYIPGAPVSLDDQVEAAREARWVSIADQYDARRHA
MTQKGREDSVYKPIAPDLLYLDNDAWSAALGDRRVLALSPLPQAPGPGVIDAGGRIGRNF
APERQQEKINLFSVLKDHVDARMAEGPVLVASYSDGARERLEGLLEDEGLLGAVTVKNAG
AIGKRGLHLAVWGLEHGFTAPGMTVIAEQDILGDRLIRSPKKRRRAENFLTEAQSLSPGD
LVVHVDHGIGRYKGLEVVTAAGAAHECLLLEYAEQSKLYLPVENIELLSRYGHEEGLLDR
LGGGAWQAKKAKLKERIREMADRLIRIAAERALRKAPVLEPEHHAWEAFSARFPYQETDD
QLRAIEDVVADLDSGTPMDRLICGDVGFGKTEVAMRAAFIAAMSGMQVAVIAPTTLLARQ
HYQSFAERFRGFPVSVAPLSRFVPASQATKTRAGLADGTVDIVVGTHALLAKNIRFKNLG
LLVIDEEQRFGVTHKERLKSLRSEVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPIDRL
SIRTYVSEFDTVTIREALLREHYRGGQSFYVVPRISDIAEIEAFLRDQVPEVSFVVAHGQ
MAAKELDERMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLSQLYQIRGRVG
RAKTRAYAYLTTKPRMRLTPGAEKRLRVLGSLDQLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGYELYQSMLEEAIAKIKSGQLEGLSEADEQWAPQINLGVPVLIPEEYVPDLDVR
LGLYRRLSGLATKVELEGFAAELIDRFGKLPREVNTLMLVVRIKAMCKRAGIAKLDGGPR
GATIQFHNDKFSNPQGLVDFIKDQKGLAKVKDNKIVVKRSWKSDADKIKGAFAIARDLAE
KVKEGKKG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagcacccgtatcgccgttggcggcgcgccagaaggcttcgacgccaagctg
atcctcgacgaggccgcccgtgcgaagggccccgtgatccatgtcgcgcgcgacgacaag
cggatggcggcgatggaggaggcgctgcgctttttcgcgcccgacatgccggtgatccgc
tttcccggctgggattgcctgccttacgaccgggtgtcgcccaatgccgatatcgccgcc
acgcggatggcgacgctggcggggctggtgcatggcgggccgtcgcggttcatcctgctg
acgaccctcaatgccgcgacgcaacgcgtgcccgcgcgcgaggtgttgcgcgaggcggcg
ttctcggcgcaggtggattaccagatcgacgaggaggcgctgaaatccttcctcgtgcgg
atgggctttacccaggcgcccacggtgatggagccgggcgattatgccgtgcgcgggggc
atcatcgacatctacccgccgggcgagagcggcccggtgcggctggacctctttggcgat
gtgctggacggtgtgcgccggttcgatcctgcgacgcagcgcaccaccgagaagctggac
cggatcgagctggctccggtcagtgaggtcattctggacgaggccgcgatcacgcgcttt
cgccagaactaccggatcgagttcggcgcggcgggcagtgacgacccgctttacgaggcg
gtgagcgcggggcgcaagcaggccgggatggagcattggctgccgctctttcacgagcgg
ctcgagacgctctttgactatattcccggcgcgccggtcagcctggatgatcaggtggag
gcggcgcgcgaggcgcggtgggtgtccatcgccgaccagtatgatgcccgcaggcacgcc
atgacccagaagggccgcgaagacagcgtctacaagcccatcgcgcccgatctgctgtat
ctcgacaacgacgcctggagcgccgcattgggcgaccgccgcgtgctggccttgtcgccc
ttgccacaggcgccggggccgggggtgatcgacgcgggcgggcgcatcgggcgcaatttc
gcccccgagcgtcaacaggaaaagataaaccttttcagtgtcctgaaagaccatgttgat
gcgcgcatggccgaggggccggtgctggtcgcgtcctattccgacggcgcgcgggagcgg
ttggaagggctgttggaagacgagggcctcttgggcgcggtcacggtgaagaacgccggg
gccatcggcaagcgcgggctgcatctggcggtctgggggctggagcacgggtttaccgca
cccggcatgacggtgatcgccgagcaggatattctcggcgaccgtttgatccggtccccc
aagaagcggcggcgggccgagaacttcctgaccgaggcgcagagcctgtcgcccggcgac
ctggtggtgcatgtcgatcacgggatcggtcgctacaaggggctggaagtggtcaccgcg
gcgggcgcggcgcatgagtgcttgttgctggaatatgccgagcaatcaaagctttacctg
ccggtcgagaatatcgagctgctcagccgctatggccatgaagagggcctgctggatcgt
ctgggcggcggcgcgtggcaggccaagaaggccaagctgaaggagcgcatccgcgagatg
gccgaccgcctgatccggatcgccgccgagcgggcgttgcgcaaggcccctgtgctggag
cccgagcaccacgcgtgggaggcgttctcggcccggttcccgtaccaggagacggacgac
cagttgcgggccatcgaggacgtggtggccgacctcgacagcggcacgccgatggaccgg
ctgatctgcggcgacgtcggctttggcaagaccgaggtggcgatgcgtgcggccttcatc
gccgccatgtcggggatgcaggtggcggtgatcgcgccgacgaccctgctggcgcggcag
cattaccagagctttgccgagaggtttcgcggctttccggtgtcggtggcgcccttgtcg
cgcttcgtgcccgcgagccaggccacgaagacccgcgcggggctggccgatggcacggtg
gatatcgtggtgggcacgcacgcgcttctggccaagaacatccggttcaagaaccttggc
ctgctggtgatcgacgaggaacagcggttcggcgtgacccacaaggagcggctgaagtcg
ctgcgctcggaagtgcatgtgctgaccctgacggcgacgccgatcccgcggaccttgcag
ttgagcctgagtggcgtgcgggacctgagcatcatcggcacgccgcccatcgaccggctg
tcgatccgcacctatgtcagcgagttcgacacggtgacgatccgcgaggcgctgttgcgc
gagcattaccggggcggacagagtttctacgtggtgccgcggatcagcgacatcgccgag
atcgaggccttcctgcgcgatcaggtgcccgaggtcagctttgtcgtggcgcatgggcag
atggcggccaaggaactcgacgagcggatgaacgccttctacgacggcaagtacgatgtg
ctcttggccacaaccatcgtggaatcgggcctcgatattcccaccgccaacacgatggtg
gtgcaccgcgccgacatgttcggcctgtcacagctttaccagataaggggccgcgtgggg
cgggccaaaacgcgagcctatgcgtacctgacgaccaagccccggatgcggctgacgccc
ggcgccgagaagcggttgcgggtgctgggaagtctggatcagctgggcgcggggttcacg
ctggccagccaggacctcgatattcgcggggcgggcaacctcttgggcgaggaacagtcc
gggcagatgcgcgacgtggggtacgagctctaccagtcgatgctggaagaggcgattgcc
aagatcaagtcgggtcagctggaagggctgagcgaggccgatgagcaatgggcgccgcag
atcaacctgggtgtgccggtgctgatccccgaggagtatgtgcccgacctggacgtgcgc
ttgggactgtaccgccgtctcagtggtttggcgaccaaagttgaactggaaggcttcgcc
gccgagctgatcgaccggttcggcaagctgccgcgcgaggtgaacacgctgatgctggtg
gtgcggatcaaggcgatgtgcaagcgcgccggcatcgccaagctggatggcgggccgcgg
ggggcgacgatccagttccacaacgacaagttttccaatccgcaggggctggtcgatttc
atcaaggaccagaaggggctggccaaggtcaaggacaacaagatcgtggtcaagcgcagc
tggaaatcggacgccgacaagatcaagggcgcgtttgccatcgcccgcgacctggcggag
aaggtgaaggaaggcaagaaggggtga
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