Roseateles amylovorans: N4261_10485
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Entry
N4261_10485 CDS
T08701
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
roi
Roseateles amylovorans
Pathway
roi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
roi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N4261_10485 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roi03400
]
N4261_10485 (ligD)
Enzymes [BR:
roi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N4261_10485 (ligD)
DNA repair and recombination proteins [BR:
roi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N4261_10485 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UXH80265
LinkDB
All DBs
Position
2460567..2463599
Genome browser
AA seq
1010 aa
AA seq
DB search
MGTAARPDSPLSRYRSKRDFRITPEPGPDPETGAEPSPPARRSSSARRRKPGTEALSFVI
QKHWASHLHYDFRLELDGVLLSWAVPKGPSYDPKQRRMAIQVEDHPLAYGGFEGTIPAKQ
YGAGEVIVWDNGTWVPEGDPKAGLRDGKLVFRLHGQKLAGLWQLVRTSRVGEPRAQWLLI
KKHDGWERSHLDYDVTAALPDSVVAQPLGRVEDREPRTAKDAEAVKGSTPATAPPAKVTR
TASKSTRGDSSKQRPVSTDTGIASPPDLSGARKARLPAKMAPQLATLVSATPPGEWVAEA
KFDGYRLMTRIEKGRASLMTRGGNDWTSRMPSLARALEALGLDNAWLDGEVVVMREDGSP
DFNRLQQALGKTRGSGASERDILYFLFDLPHLNGYDLREVPLRDRRAVLRALLDGHGHEA
RDHREPRVPDDDERLRFSEDFAVPPEDMLAAACQMRLEGLILKRPDAPYVSARSDSWVKL
KCQRRQEFVVIGFTDRSDGSKGLGSLLLGYYGTDDGRHDADHADTPDDADDADDGSGDRS
GAARQSGHQATPGKGAQNGRRGSGTSALSLRYAGRVGTGWSLSAGASLRRQLEAQLVAHA
PVDTHEIQRSHWMRRPSGDERWVKPTMVVEVAFAEWTPDGHVRHASFQGVRDDKPARAIR
REATTAPEAISAAPAKRESEHPSTTARSTRSTHSTHSTHSTDAPGAPGATGVTSATRTSA
KPSRASKAVAAMPSDRSTLQITHPERVIDPSTGLTKIDLVRYYASVADWLMPHLARRPVA
VVRAPEGVDGQQFFQKHVDGDELIVIRDAAAVLQFTQLNAVEFHTWNAQADKLDRPDRII
FDLDPGTGVSWAQVRESALLVRALLRELGLESWLKTSGGKGLHVVVPLMRRHDHATCKAF
SQAVVQHLAVTLPKRFSAKSGPRNRVGKVFADYLRNGEGQTTAAAFSARARPGLGVSMPI
HWDQLDEVKRGDQWTIADARDHLSLRREDPWKAYWQHHQTLTAAIKLLAS
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccgccgccagacccgattcgccgctgtcgcgctaccgcagcaagcgggacttc
cgcatcacgccggagccgggtcctgatccggagaccggggcggagccttcgccgccggcc
cgccgctcttcctcggcgcgacggcgcaagcccggcaccgaggcgctctcgttcgtcatc
cagaagcactgggccagccatctccactacgacttccggctggaactcgatggcgtgctg
ttgagctgggccgtgcccaaagggccgtcctacgatccgaagcagcgccgcatggcgatc
caggtggaggaccatccgctggcctatggcggcttcgagggcaccatcccggccaaacag
tacggcgcgggcgaggtgatcgtgtgggacaacggcacctgggtccccgagggtgatccc
aaggctggactgcgcgacggcaagctggtgttccggctgcacggccagaagctggccggg
ttatggcagctcgtccgcacctcgcgtgtcggcgagccgcgtgctcagtggctgctgatc
aagaagcatgacggctgggaacgatcgcatctggactacgatgtcaccgctgccctgccg
gacagcgtggtggcgcagcccctgggtcgtgtggaggatcgagaaccccgcacggcgaaa
gacgccgaggcggtcaagggatcgacacccgcgactgcaccccctgccaaagtaacgcgc
accgcttccaaatcgacgcgcggggactcgtcaaaacagaggcccgtctcgaccgacacc
ggcatcgcctcgcctcccgacctgagcggtgcgcgcaaggccaggctgccggcgaagatg
gcgccgcaactggccacgttggtcagcgccacaccacccggcgagtgggtggccgaggcc
aagttcgatggctatcggctgatgacgcgcatcgagaagggccgggccagcttgatgacg
cggggcggcaacgactggacctcgcgcatgccgtcgctggcccgcgcactcgaagcgctg
ggcctggacaacgcctggctggacggcgaggtcgtggtcatgcgggaggacggatcgccc
gatttcaaccgacttcagcaggcactgggcaagacacggggcagtggtgccagcgagcgc
gacatcctctacttcctcttcgatctgccccacctcaatggctacgacctgcgcgaggtg
ccgttgcgtgatcgccgtgccgtcctgcgtgcgctcctggacggccacggacacgaggcc
cgcgatcaccgagaaccccgcgtgcccgacgatgacgaacgcctgcgcttcagcgaggac
ttcgccgtcccgcccgaggatatgttggcggcggcctgtcagatgcggctggaaggactg
atcctcaaacgccccgacgcgccctatgtcagcgcgcgcagcgacagctgggtgaagctc
aaatgccagcggcggcaggagttcgtcgtcatcggattcaccgatcgatccgatggctcc
aagggactcggcagcttgctgctcggctactacgggacggacgacgggcgccatgacgcc
gatcacgccgatacccccgatgacgccgatgacgccgatgacggcagcggtgatcggagc
ggtgccgctcgccagtcggggcaccaggcgacgcccggcaagggggctcagaacggtcgt
cgtggttcggggacttcggcgctgtcgctgcgttatgcggggcgcgtcggaacggggtgg
tcgctgtcggcgggcgcgtcgctgcggcggcagttggaggcgcagctcgtcgcgcacgcg
ccggtcgatacccatgagatccagcgcagtcattggatgcgccgtccctcgggggatgaa
cgatgggtgaagcccacgatggtggtggaagtggcctttgcggaatggacgcctgatggc
catgtgcgccacgcctccttccagggcgtgcgtgacgacaaaccggcgcgcgcaatccgt
cgggaagccaccaccgcgcccgaggccatctcggcagcgcccgcaaagcgggagtcggag
catcccagcacgacggcccgatcgactcgctcgacccattcgacccattcgacccattcg
accgatgcgcccggtgcgcccggtgcgaccggtgtgaccagtgcgacccgcacgtccgcc
aaacccagccgtgcctccaaggccgttgcggcgatgcccagcgatcggtcgaccttgcag
atcacccacccggagcgggtcatcgacccgtccaccggtctgaccaagatcgacttggtg
cgttattacgccagcgtcgcggactggctgatgcctcatctggcccgtcggccggtggca
gtggtccgggcgccggagggcgtcgacggtcagcagttcttccagaagcatgtcgacggc
gatgaactcatcgtcatccgcgatgccgccgccgtgctgcagttcacccaactgaatgcg
gtggagttccacacctggaacgcgcaagcggacaagctggatcggccggatcgcatcatc
ttcgacctcgatcccggaacgggcgtgagctgggcgcaagtgcgggaatcggcgctgctg
gtgcgggcgctgttgcgcgagctgggtctggaaagctggctcaagaccagcggcggcaag
gggctgcatgtggtggtgcccctgatgcgccgccatgaccacgcgacctgcaaagcgttc
agtcaggccgtggtccagcatctggcggtgacgctgcccaagcgcttctcggccaagagc
ggcccccgcaaccgggtcggcaaggtgtttgccgactatctgcgcaatggcgagggccag
accacggccgccgccttttcggcgcgggcgcggcccgggctgggggtgtcgatgccaatt
cactgggatcagctcgacgaggtcaagcgcggcgatcaatggaccatcgcggatgcgcga
gaccatctgagcctgcgccgcgaagatccgtggaaagcctactggcagcaccatcagacg
ctcaccgccgccatcaaattgctggcgagctga
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