KEGG   Ralstonia pickettii 12D: Rpic12D_0488Help
Entry
Rpic12D_0488      CDS       T00925                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpf  Ralstonia pickettii 12D
Pathway
rpf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Rpic12D_0488
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpf03400]
    Rpic12D_0488
Enzymes [BR:rpf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Rpic12D_0488
DNA repair and recombination proteins [BR:rpf03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Rpic12D_0488
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ACS61794
UniProt: C6BCT3
LinkDB All DBs
Position
1:complement(513184..515787)
Genome map
AA seq 867 aa AA seqDB search
MPRHLADYRRKRDFTQTQEPAGARRKADEQRDHGALHFVIQKHDATRLHYDFRLELDGTL
KSWAVPKGPSLDPADKRLAVHVEDHPLDYADFEGHIPEGQYGGGDVIVWDRGTWRPHGDP
RKAYRDGKLKFDLHGEKLHGAWALVRTHLHGTGRHPKEQWLLIKERDDQVRASSDYDVTE
ALPASVITGENIGSKPRGKAKAKSSDGKTGRSEPEQVQPPAGAVPAPLPRTLEPQLATLV
DGPPAQGEWDYEVKFDGYRILARIDGDTVRLFSRNGRDWTGKLPRQARTLQALGLREAWL
DGEVVVMGERGVPDFQALQNAFETAHAEHIAYYLFDIPFCNGMDLRGVPLRERRALLERI
LNAAPGDLDREAVLFSGTFHAAPEDLLSSACSMSLEGVIGKRADAAYRAGRSPAWIKLKC
GQRQEFVIGGYSAPKGSRSGFGALLLGVYDDAGKLRYAGRVGTGFNETSLHALHHELTGL
TVDTPPFANPPTGSDARDVQWVKPERVAEIAFAEWTREGIVRQAVFQGLRDDKPARNIVR
EQAKPPSAAARKETRAVHATERKVRPGAERIADVDVTHPDRVIEKASGTTKADLARYYAG
VAEWMLPHLHNRPTSLVRAPDGIDGERFFQKHSAALKLQGITQLDPSLDPGHPSLLAINS
AEALVGAVQMGTVEFHTWNALADRIEQPDRIVFDIDPDPALPFARVIEATQLMLAMLDEL
GLKAFLKTSGGHGMHVVVPLTRREASGWDTLKAFAQAVVQHMAATFPDRFVAKMGPQNRV
GKIFIDYLRNNRGASTVAAYSVRARTGLPVSVPIRHDELEGLQSSAQWTLRTLPDRLAKL
KGDPWADYAGTRQSVTADMRKRVGAND
NT seq 2604 nt NT seq  +upstreamnt  +downstreamnt
atgccgcgccatctcgccgactaccgccgcaagcgcgatttcacgcagacccaggaaccc
gccggcgcgcgccgcaaagccgacgaacagcgtgaccatggcgccctgcacttcgtgatc
cagaagcacgacgcaacgcgactgcactacgacttccggctggaactcgacggcacgctc
aagagctgggccgtccccaagggcccgagcctggaccccgccgacaagcgcctcgcggta
cacgttgaagaccatccgctggactacgccgatttcgaaggccatatccccgaaggccaa
tacggcggcggcgacgtgattgtgtgggaccgcgggacatggcgcccgcatggcgatccg
cgcaaggcctaccgcgacggcaagctcaaattcgacctccatggcgaaaagctgcatggt
gcatgggcgctggtgcgcacgcacttgcacggcacgggcagacatccgaaagaacagtgg
ttgctgatcaaggaacgggacgaccaggtgcgcgcatccagcgactacgacgtgacggag
gcactgcccgcgagcgtgattaccggcgagaacatcggctccaaaccccgtggcaaagca
aaggccaagtccagtgacggcaagactgggcgctccgaaccggagcaagtccaaccgccc
gccggtgccgtgcccgccccgttgcccagaacgctggagccccaactcgccacgctcgtc
gatggtccgcccgcccaaggcgaatgggactacgaagtcaagttcgacggctaccgcatc
cttgcacgcattgacggcgacacggtgcgcctgttcagccgcaacggccgcgactggacg
ggcaaactgccccgtcaggcgcgcacactgcaggcgctgggcctgcgcgaggcgtggctc
gacggcgaagtcgtggtgatgggcgagcgcggcgtgcccgacttccaggcgctgcagaac
gcctttgaaaccgcgcatgccgagcacattgcctactacctgttcgacattccgttctgc
aacggtatggacttgcgcggcgtgccgttgcgggagcggcgagcgctgcttgagcgcatt
ctcaatgccgccccgggtgacctggaccgcgaagcggtgctcttctcagggacatttcac
gcggcacccgaagacttgctgtcttccgcgtgcagcatgtcgctcgaaggggtgatcggc
aagcgcgccgatgcggcgtaccgggccggccgcagccctgcctggatcaagctcaaatgc
gggcagcggcaggaattcgtgatcggcggctacagcgcgcccaagggcagccgcagcggc
ttcggcgcgctgctgctcggcgtctatgacgacgcgggcaagctgcgctatgcgggccgt
gtcggcacgggcttcaacgagacgagtctgcacgctttgcaccacgagctgacgggtctg
accgtcgacacgccgcccttcgccaatccgcccaccggcagcgatgcgcgcgacgtgcaa
tgggtgaagcccgaacgcgtggcggaaatcgccttcgccgaatggacgcgcgaaggcatc
gtgcggcaggcggtgtttcaaggtttgcgcgacgacaaacccgcgcgcaacatcgtgcgt
gaacaagccaagccgcccagtgccgccgcccgcaaggagacccgcgccgtgcatgctacc
gaacgcaaggtgcgccccggtgccgaacgcatcgccgatgtggacgtcacgcatccggat
cgcgtgatcgagaaagccagtggcaccaccaaggcggacctggcgcgctattacgcgggc
gtggccgagtggatgctgccgcatctgcacaaccggccgacatcgctggtgcgcgcgccc
gacggcatcgacggcgagcgcttcttccagaagcattccgccgcgctcaagctgcagggc
atcacgcagctggacccatcgctcgacccggggcatccgtcgctgcttgcgatcaactcg
gccgaggccctggtcggggcggtgcagatgggcacggtggaattccacacgtggaatgcc
cttgccgaccgcatcgaacagcccgaccgcatcgtcttcgatatcgacccagacccagcg
ctgcccttcgcgcgcgtgatcgaggccacgcagctcatgctggccatgctcgatgaactg
ggcctgaaggccttcctgaaaaccagcggcggccacggcatgcatgtggtcgtgccgctc
acgcgccgtgaggcttccggctgggacacgctcaaggccttcgcgcaggccgtggtgcaa
catatggccgcgacgttccccgaccgctttgttgccaagatgggtccgcagaaccgcgtg
gggaaaatcttcatcgactatctgcgcaacaaccgcggggcgagcaccgtggccgcctat
tcggtgcgcgcgcggacggggttgccggtgtcggtgccgatccgccatgacgaactcgaa
gggctgcagtcgtctgcgcagtggacgttgcgtacgctgccggatcggctcgccaagctc
aagggcgacccatgggccgactatgctggcacgcgccaatcggtgacagccgacatgcga
aagcgcgtcggtgccaatgactga

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