Ralstonia pickettii 12D: Rpic12D_0488
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Entry
Rpic12D_0488 CDS
T00925
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpf
Ralstonia pickettii 12D
Pathway
rpf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rpic12D_0488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpf03400
]
Rpic12D_0488
Enzymes [BR:
rpf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rpic12D_0488
DNA repair and recombination proteins [BR:
rpf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rpic12D_0488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ACS61794
UniProt:
C6BCT3
LinkDB
All DBs
Position
1:complement(513184..515787)
Genome browser
AA seq
867 aa
AA seq
DB search
MPRHLADYRRKRDFTQTQEPAGARRKADEQRDHGALHFVIQKHDATRLHYDFRLELDGTL
KSWAVPKGPSLDPADKRLAVHVEDHPLDYADFEGHIPEGQYGGGDVIVWDRGTWRPHGDP
RKAYRDGKLKFDLHGEKLHGAWALVRTHLHGTGRHPKEQWLLIKERDDQVRASSDYDVTE
ALPASVITGENIGSKPRGKAKAKSSDGKTGRSEPEQVQPPAGAVPAPLPRTLEPQLATLV
DGPPAQGEWDYEVKFDGYRILARIDGDTVRLFSRNGRDWTGKLPRQARTLQALGLREAWL
DGEVVVMGERGVPDFQALQNAFETAHAEHIAYYLFDIPFCNGMDLRGVPLRERRALLERI
LNAAPGDLDREAVLFSGTFHAAPEDLLSSACSMSLEGVIGKRADAAYRAGRSPAWIKLKC
GQRQEFVIGGYSAPKGSRSGFGALLLGVYDDAGKLRYAGRVGTGFNETSLHALHHELTGL
TVDTPPFANPPTGSDARDVQWVKPERVAEIAFAEWTREGIVRQAVFQGLRDDKPARNIVR
EQAKPPSAAARKETRAVHATERKVRPGAERIADVDVTHPDRVIEKASGTTKADLARYYAG
VAEWMLPHLHNRPTSLVRAPDGIDGERFFQKHSAALKLQGITQLDPSLDPGHPSLLAINS
AEALVGAVQMGTVEFHTWNALADRIEQPDRIVFDIDPDPALPFARVIEATQLMLAMLDEL
GLKAFLKTSGGHGMHVVVPLTRREASGWDTLKAFAQAVVQHMAATFPDRFVAKMGPQNRV
GKIFIDYLRNNRGASTVAAYSVRARTGLPVSVPIRHDELEGLQSSAQWTLRTLPDRLAKL
KGDPWADYAGTRQSVTADMRKRVGAND
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccatctcgccgactaccgccgcaagcgcgatttcacgcagacccaggaaccc
gccggcgcgcgccgcaaagccgacgaacagcgtgaccatggcgccctgcacttcgtgatc
cagaagcacgacgcaacgcgactgcactacgacttccggctggaactcgacggcacgctc
aagagctgggccgtccccaagggcccgagcctggaccccgccgacaagcgcctcgcggta
cacgttgaagaccatccgctggactacgccgatttcgaaggccatatccccgaaggccaa
tacggcggcggcgacgtgattgtgtgggaccgcgggacatggcgcccgcatggcgatccg
cgcaaggcctaccgcgacggcaagctcaaattcgacctccatggcgaaaagctgcatggt
gcatgggcgctggtgcgcacgcacttgcacggcacgggcagacatccgaaagaacagtgg
ttgctgatcaaggaacgggacgaccaggtgcgcgcatccagcgactacgacgtgacggag
gcactgcccgcgagcgtgattaccggcgagaacatcggctccaaaccccgtggcaaagca
aaggccaagtccagtgacggcaagactgggcgctccgaaccggagcaagtccaaccgccc
gccggtgccgtgcccgccccgttgcccagaacgctggagccccaactcgccacgctcgtc
gatggtccgcccgcccaaggcgaatgggactacgaagtcaagttcgacggctaccgcatc
cttgcacgcattgacggcgacacggtgcgcctgttcagccgcaacggccgcgactggacg
ggcaaactgccccgtcaggcgcgcacactgcaggcgctgggcctgcgcgaggcgtggctc
gacggcgaagtcgtggtgatgggcgagcgcggcgtgcccgacttccaggcgctgcagaac
gcctttgaaaccgcgcatgccgagcacattgcctactacctgttcgacattccgttctgc
aacggtatggacttgcgcggcgtgccgttgcgggagcggcgagcgctgcttgagcgcatt
ctcaatgccgccccgggtgacctggaccgcgaagcggtgctcttctcagggacatttcac
gcggcacccgaagacttgctgtcttccgcgtgcagcatgtcgctcgaaggggtgatcggc
aagcgcgccgatgcggcgtaccgggccggccgcagccctgcctggatcaagctcaaatgc
gggcagcggcaggaattcgtgatcggcggctacagcgcgcccaagggcagccgcagcggc
ttcggcgcgctgctgctcggcgtctatgacgacgcgggcaagctgcgctatgcgggccgt
gtcggcacgggcttcaacgagacgagtctgcacgctttgcaccacgagctgacgggtctg
accgtcgacacgccgcccttcgccaatccgcccaccggcagcgatgcgcgcgacgtgcaa
tgggtgaagcccgaacgcgtggcggaaatcgccttcgccgaatggacgcgcgaaggcatc
gtgcggcaggcggtgtttcaaggtttgcgcgacgacaaacccgcgcgcaacatcgtgcgt
gaacaagccaagccgcccagtgccgccgcccgcaaggagacccgcgccgtgcatgctacc
gaacgcaaggtgcgccccggtgccgaacgcatcgccgatgtggacgtcacgcatccggat
cgcgtgatcgagaaagccagtggcaccaccaaggcggacctggcgcgctattacgcgggc
gtggccgagtggatgctgccgcatctgcacaaccggccgacatcgctggtgcgcgcgccc
gacggcatcgacggcgagcgcttcttccagaagcattccgccgcgctcaagctgcagggc
atcacgcagctggacccatcgctcgacccggggcatccgtcgctgcttgcgatcaactcg
gccgaggccctggtcggggcggtgcagatgggcacggtggaattccacacgtggaatgcc
cttgccgaccgcatcgaacagcccgaccgcatcgtcttcgatatcgacccagacccagcg
ctgcccttcgcgcgcgtgatcgaggccacgcagctcatgctggccatgctcgatgaactg
ggcctgaaggccttcctgaaaaccagcggcggccacggcatgcatgtggtcgtgccgctc
acgcgccgtgaggcttccggctgggacacgctcaaggccttcgcgcaggccgtggtgcaa
catatggccgcgacgttccccgaccgctttgttgccaagatgggtccgcagaaccgcgtg
gggaaaatcttcatcgactatctgcgcaacaaccgcggggcgagcaccgtggccgcctat
tcggtgcgcgcgcggacggggttgccggtgtcggtgccgatccgccatgacgaactcgaa
gggctgcagtcgtctgcgcagtggacgttgcgtacgctgccggatcggctcgccaagctc
aagggcgacccatgggccgactatgctggcacgcgccaatcggtgacagccgacatgcga
aagcgcgtcggtgccaatgactga
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