Rhodococcus qingshengii: C1M55_16525
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Entry
C1M55_16525 CDS
T05315
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1M55_16525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rqi03400
]
C1M55_16525
DNA repair and recombination proteins [BR:
rqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1M55_16525
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1M55_16525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_22
AAA_16
AAA_5
DUF87
AAA_19
HEM4
Helicase_RecD
UPF0730
P-loop_SecA
AAA_7
DUF5937
AIG1
Apolipoprotein
Motif
Other DBs
NCBI-ProteinID:
AUS32551
UniProt:
A0AA41JZ13
LinkDB
All DBs
Position
1:complement(3542433..3544595)
Genome browser
AA seq
720 aa
AA seq
DB search
MAFASEHPVVAHSEFRPVGDIERSDARFEVVSPYEPAGDQPAAIAELEKRINEGEKDVVL
LGATGTGKSATTAWLIEKLQRPALVMAPNKTLAAQLANELREMLPNNAVEYFVSYYDYYQ
PEAYIAQTDTYIEKDSSVNDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDR
SIQLDVGVEVPRDAFLRLLVDVQYNRNDMAFTRGSFRVRGDTVEIIPSYEELAVRIEFFG
DEIEALYYLHPLTGDIVRQVDTVRIFPATHYVAGPERMERAAKDIEAELEERLAELEGKG
KLLEAQRLRMRTQYDLEMIKQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPEDFLLVID
ESHVTVPQIGAMYEGDMSRKRNLVEFGFRLPSATDNRPLTWEEFSQRIGQTVYLSATPGK
YELGQSGGEFVEQVIRPTGLIDPEVIVKPTKGQIDDLVHEIRERAERDERVLVTTLTKKM
SEDLTDYLLELGIRVRYLHSDIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLV
AILDADKEGFLRSSTSLIQTIGRAARNVSGQVHMYADKITASMAQAIEETERRREKQVAY
NEKMGVDPQPLRKKIADILDQVYEEAEDTAASVDVGGSGRNATRGRRAQGEAGRAVSAGV
YEGRDTKSMPRAELADLVKELTDQMMNAARDLQFELAGRLRDEISDLKKELRGMDAAGLK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcttccgaacatcccgtggtcgcgcattccgagtttcggccggttggtgac
atcgagcgctcagacgcgcgcttcgaggtcgtcagcccgtacgaaccggcaggcgatcag
ccggcagctatcgccgagctggagaaacggatcaacgagggggagaaggacgtagtcctc
ctcggtgcgaccggtaccggcaagtcggccacgactgcgtggttgatcgagaagctgcag
cgcccggctctggtgatggctccgaacaagactttggcggctcagctcgcgaacgagctt
cgggaaatgctacccaacaacgcggtcgagtacttcgtctcgtactacgactactaccaa
cccgaggcgtacatcgcccagacggacacctacatcgagaaggattcgtccgtcaacgac
gatgtcgagcggctgcgccactcggcgacgtccagccttctgtcacgacgggacgtggtc
gtggtggcatcggtgtcgtgcatctacggcctcggtacaccgcagtcgtacctcgatcgc
tcgattcagctggacgtcggtgtggaggtgccgcgggatgcgttcctgcgtctgctcgtc
gacgttcagtacaaccgcaacgacatggcgttcacgcgaggttcgttccgcgtgcgcggc
gacacggtcgagatcattccgtcgtacgaagagctggcggtccgcatcgaattcttcggt
gacgagatcgaggcactgtactacctccatccactgactggtgacatcgttcgccaggtc
gacacggttcgtatcttcccggcgacgcactacgtcgccggccctgaacgcatggagcgt
gccgccaaggacatcgaggcggaactcgaagagcgactcgccgagctcgaaggcaagggc
aagctcctcgaggctcagcgtctgcgcatgcgtacgcagtacgacctcgagatgatcaaa
caggtcggattctgctccggcatcgagaactactcgcgccacatcgacggccgtggccct
ggaactgcccccgcaaccttgatcgactacttcccggaagatttccttctggtcatcgac
gagtcgcacgtgacggttcctcagatcggcgccatgtacgagggcgatatgtcgcgcaag
cgaaacctggtcgagttcggattccggctaccgtcggcaacagacaaccgccctctgact
tgggaagaattcagtcagcggatcggtcagaccgtctacttgtcggcgacaccaggtaag
tacgagttgggtcagtccggcggtgagttcgtcgagcaggtgatccgcccgaccggattg
atcgatcccgaggtcatcgtcaaacccaccaagggacagatcgacgatctcgttcacgaa
atccgcgagcgagcggaacgtgacgagcgtgtgctggtcacgacgttgaccaagaagatg
tcggaagatctgaccgattacctgctcgaactcggtattcgcgtccgctacctgcactcg
gatatcgatacgctccggcgagtcgagttgctccgtcagctccgcctgggggagtacgac
gtgctggtcggcatcaacctcctgcgtgagggactcgaccttcccgaggtgtcgctggtc
gcgattctcgatgccgacaaagaaggtttcctacgtagctccaccagcctcattcagacg
atcggccgagcggctcgaaatgtatccggtcaagtgcacatgtatgcggacaagatcacc
gcttccatggcgcaggccatcgaggaaaccgagcgacgacgcgagaagcaggtcgcctac
aacgagaagatgggcgtcgacccacaacctctacgcaagaagatcgcggacattctcgat
caggtgtacgaggaggcagaggacactgcggcgtccgtggacgtcggtggttcgggtcgc
aatgcgacgcgtggtcggcgtgcgcagggtgaggccggtcgtgcggtcagtgcgggtgtg
tacgaggggcgcgacaccaaatcgatgcctcgggccgaattggcagatctggtcaaggaa
ctcaccgatcagatgatgaacgctgcacgtgaccttcagttcgagttggctgggcgattg
cgagacgaaatctcggatttgaagaaggagcttcgaggaatggacgccgcgggtctcaag
tag
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integrated database retrieval system
