Rickettsia rickettsii Brazil: RPN_05865
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Entry
RPN_05865 CDS
T01737
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rrb
Rickettsia rickettsii Brazil
Pathway
rrb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RPN_05865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrb03021
]
RPN_05865
03400 DNA repair and recombination proteins [BR:
rrb03400
]
RPN_05865
Enzymes [BR:
rrb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RPN_05865
Transcription machinery [BR:
rrb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RPN_05865
DNA repair and recombination proteins [BR:
rrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RPN_05865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AFB22646
LinkDB
All DBs
Position
complement(979002..983120)
Genome browser
AA seq
1372 aa
AA seq
DB search
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYEELQTTSSEVKKKKLVKRLKLVENFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKSEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDNEVGAGMMFSDLAEMEHALYNK
FITIHTKIKYRRNQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINKTQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATLPVNDAPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTAAI
DIFHPVTNDLILNKGELINEAKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVDASYDAKVKIISRNVV
INSEERKIVMSRNCELLLLDNHGNEKARNKIPYGARLLVDDGDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEV
ITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEIDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVNEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTD
SGGTTLLAGEKIDRHEFDEINEKAIKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENV
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagtaaatttttacggacaattaagtaatactcaacaatttgatcagataagg
attaatatagcaagtcccgatcaggtacgttcgtggtctttcggtgaagtaacaaaacct
gaaacaattaactatcgaacttttaaacctgagaaagatggtttattttgtgcaagaatt
tttggtccggtaaaagattatgaatgtctctgcggtaaatataagcggatgaaaaaccgt
ggcattacgtgtgagaaatgcggcgttgaagttacggtttctagagtaagacgtgaaaga
atggggcatattgaacttgcagctcccgttgctcatatttggtttttaaagtcgctacct
tcaagaattagtacacttcttgatatgacaatgcgagatgtagaaaagattctttatttt
gaaaattatgtagtagttgacccagggctatcgattttacaaaaaggcgaactcttaaca
gaggaagaattacagaaagcaaaagataagtacggtgaagatgcatttactgcctctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagag
ttatacgaggaattacaaaccacttcttcagaagtcaaaaagaaaaaattagtaaagcgt
ttaaaattagtagagaattttttagagtcagaaaacaagccggaatggatgattatggat
gttttaccggttattcctcctgaaattagaccgcttgttatgcttgatggcggaagattt
gctacttcagacttaaatgaactttatagaagagtaattaatagaaataatcgtttaaag
aaattaatagagtcaaaagctcctgatataatagtcagaaatgaaaaaagaatgttacaa
gaagcggtggatgcgttatttgataacggtcgtcgcggtagagcagcgaaaaatgctaat
aagcgtccatttaagtcattaagtgatatgcttaaaggtaagcagggacgtttccgtcag
aacttgctaggtaagagggttgattactcaggacgttcggttatcgtggtaggacctgag
cttaaacttcaccagtgcggtttacctaaaaaaatggctctggagttatttaagccgttt
atttattctaagcttgagttgtacggcatcgctacaactattaaagccgctaaaagaatg
gtggaagctgaaaaatccgaagtgtgggacgtgcttgaagaggtaattagagagcatccg
gttttactgaatagggctccgacgttacataggcttggtattcaagcatttgaaccgcta
ttaattgaaggtaaagcgatccagcttcatccgcttgtgtgtgctgcgttcaatgcggat
tttgatggtgatcagatggcagtacatatcccgttatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagccccgcaaacggtcgtcctattatt
gtaccggataaagatatagtgcttggtttatattatctaacccttgcatttgataatgaa
gtaggcgcagggatgatgttctcagatttagctgagatggaacatgctttatataataaa
tttataactattcatacaaagataaaatatcgcagaaatcagttaaatgccgaaggtaaa
atggtccctgttatcattgatactacttacggtaggttaatggtcggtgagttattgcct
tctaaccctaatatagaattcaagtttattaataaacaactaactaaaaaagacatatca
ttagttatagatttagtttatcgtcactgcggtcaaaaagctacggtaatttttgccgat
cagctaatgaaactaggttttaaatatgcttgttcttcaggtatttcttttggaatggac
gatatggtagtaccagaatctaagagtactcatatcaacaaaactcagcttgaaataaaa
gaatttgaacaacaatattcaaacggtttaattacttacggagagaaatataataaagta
gtcgatgcttggtcaagatgtaccgatagagtagcaaacgacatgatgaaagagattgct
acgctgccggttaatgatgctccaaatcatcagaaaataaatgctatatatatgatggct
atttccggagcaagaggttctttccagcaaattaagcagctaggcggtatgcgaggttta
atgaccaaatcaaacggtcaaattatacaaactcctattatctctaactttaaggaagga
ttaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaatagatacg
gctttaaaaacagcaagctcaggttacttaacaagaaaattagtagatgttgcacaagat
tgtattattactgaaaaagattgtggaactgataaaggaattgaagttaagagtgttatt
gaaggtggagaagttatagtacctttagctgaaaagattttaggtcgtactgctgctatt
gatatatttcatccggtaactaatgatctaattctcaataaaggcgagcttattaatgaa
gcaaagttagagcagattgagtcggcaggactcgacaggattatgattaaatccgtatta
acctgtgaaagtactaccggtatatgtagcatatgttacggtagggatcttgctaccggt
acattagtatcagagggtgaagcaattggggttattgctgctcaatctataggtgaaccg
ggtacgcagcttacaatgagaactttccatatcggaggagcggcaacaaaaggtgctgag
gtttcttccgtagacgcttcctatgacgcaaaagtgaaaattataagtcgtaacgttgtg
attaattctgaagaacgcaaaattgttatgagccgaaattgtgaattattattgcttgat
aatcacggtaatgaaaaggctcgtaataaaattccatacggtgctagattacttgttgat
gatggtgatatggtgattaaaactcaaaaactagcagaatgggatccttatactataccg
attatcacggagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgacgtaactgacgaagctaccggaataccgagtaaagttattattgaatcaaagcaa
tattcacgcggtgcagaattacgtccgcgtatacagcttttagatgctaaaggtgaagtt
atcaccttatcaaacggtttagaagctagatattacttgccggttggagcagttttaagc
gtagaagacggagtacaaatatcggtaggtgatatcattgcacgtataccgaaagaatca
accactactaaagatattaccggtggtttaccaagagttgccgagcttgtagaagcaaga
cgccctaaagatcatgcagttattgccgaaattgacggtagagtagaattcggtaaagac
tataaatctaaaagacgtattattatacatccgattgatgaaacaatgtctattgaatat
atggtaccaaaaggcaagcatgttgtagttaacgaaggtgactttgttaaaaaaggtgat
ttattgattgatggtaatccggtacttcaagatattttaaaagtaatgggcgtagaggtt
cttgcaaattatattgttaatgaggttcaagccgtttatcgtctacaaggtgtaaagatt
gatgataagcacatagaagttattattcgtcagatgttacaaaaagtagaggttacggat
tcaggtggaactacgttattagcaggtgaaaaaatagatagacatgaatttgatgagata
aatgaaaaagctataaaaaatggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctgcaaactagatcgtttatctccgcggcatcattccaagagact
actagagttttaactgaagcagctattgctggtaaagtagataagttgcgaggactaaaa
gaaaacgtgatagttggacgattagtacctgctggaaccggttactttatggataaaatg
cgtaaagcagccgtaaagcttgatgaagagaatgtataa
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