Rhizobium ruizarguesonis: J3P73_18555
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Entry
J3P73_18555 CDS
T07270
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rrg
Rhizobium ruizarguesonis
Pathway
rrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3P73_18555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrg03019
]
J3P73_18555
Enzymes [BR:
rrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J3P73_18555
Messenger RNA biogenesis [BR:
rrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J3P73_18555
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
Flavi_DEAD
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QSZ03411
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All DBs
Position
3745173..3746888
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AA seq
571 aa
AA seq
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MVRSGDSRCGAPKGFALTNFESLGVSKPIVATLFQLGIETPTPIQEHSIPLLLEGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSPL
RINVVVGGVSINKQQLQLEKGTDILVATPGRLLDLVNRRAITLTAVRYLVLDEADQMLDL
GFVHDLRKIAKMVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVAGKNDKTELLRKSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQ
RERALKAFRDGSVKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEARLLRDIERLMGIDITVASGEAPANMNGAPRRANGNNRNRNGGQGREGQG
RGEGRGDQNRSEHRGSRQERRPRREGEGGEVRAGGEERRPRPERPTGRNEDFRGQRRGEA
ATNLGPDNDLASTSDFRPSAKPQRPAHANGEPSGHHRGNSRHAHGRPARKHGEDRGPQQA
QAGEPRRDGNGGNRRGGSGSRNGGGQRRERA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcgatagtcgttgtggcgccccgaaaggttttgccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgctactttgttccagctcggcatcgaaacg
ccgacgccgatccaggaacattcaattcctctcctcctcgaaggccgcgacctgatcggc
cttgcccagaccggcaccggcaagacggccgctttcggcctgccgctgatcgaaaagcta
ctcgccgatgaacggcgtcccgacaaccgcacgacgcggacgctgattctcgccccgacc
cgcgaactggtgaaccagatcgccgagagcctgaagaagttcatccgcaagtcgccgctg
cgcatcaatgtcgtcgttggcggcgtttcgatcaacaagcagcagcttcagctcgaaaaa
ggcaccgacatcctcgtcgccacaccgggccgcctgctcgacctcgtcaatcgccgcgcg
atcacgctgactgcggttcgttatctcgtgctcgacgaagccgaccagatgctcgacctc
ggcttcgtgcatgatctgcgcaagatcgccaagatggtgccgaagaagcgccagaccatg
ctcttctcggccaccatgccgaaggcgattgccgatcttgccggcgaatatctcgtcgat
cccgtcaaggtcgaagtcacgcccccgggcaaggctgccgacaaggtcgagcagtacgtc
catttcgtcgccggcaaaaacgacaagacggaactgctccgcaagtcgctgaccgaaaac
cctgatggccgcgccatggtcttcctgcgcaccaagcatggtgccgagaagctgatgaag
catctcgaaaacatcggctactccgtcgcttcgatccacggcaacaagagccagggtcag
cgcgagcgggcgctgaaggctttccgcgacggcagcgtcaagacgctgatcgccaccgac
gtcgccgcccgcggcatcgacatcccggctgtcagccacgtctacaattacgatctgcct
gaagtgcctgacgcctatgtccatcgcatcggccgcaccgcgcgcgccggccgcgacggc
atcgccatcgccttctgcgctcccgatgaagccaggctgctgcgtgatatcgagcgcctg
atgggcatcgacatcactgtcgcaagcggtgaagctccggcaaacatgaacggcgcgccc
cgtcgcgccaacggcaacaaccgcaatcgcaatggcggccagggtcgcgaaggtcagggt
cgcggcgaaggccgcggcgaccagaaccgttcggagcatcgcggcagccgtcaggaacgc
cgcccgcgccgcgaaggtgaaggcggtgaagtccgcgccggcggcgaagagcgtcgtcca
cgtccggagcgcccgaccggccgcaatgaggatttccgtggccagcgccgcggcgaagcg
gccacgaatctcggtcctgacaacgatctggcctcgacctccgacttccgcccctcggca
aagccgcagcgtcctgcgcacgccaatggcgaaccgagcggccatcaccgcggcaacagc
cgccacgcccatggccgtccggcccgcaagcatggcgaagaccgcggcccgcagcaggcc
caggccggcgaaccgcgccgggacggcaacggcggcaatcgtcgcggtggctccggctcc
cgcaacggcggcggccagcgccgcgaacgcgcctga
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