Rhizobium rhododendri: PR018_10445
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Entry
PR018_10445 CDS
T08971
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rrho
Rhizobium rhododendri
Pathway
rrho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PR018_10445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrho03019
]
PR018_10445
Enzymes [BR:
rrho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PR018_10445
Messenger RNA biogenesis [BR:
rrho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PR018_10445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
Helicase_C_2
UTP25
AAA_19
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WFS21601
LinkDB
All DBs
Position
2143615..2145195
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AA seq
526 aa
AA seq
DB search
MSEQIVTSLTQQGYSTPTPIQAEAIPLVLQGRDLVGLAQTGTGKTAAFGLPIIEMLMKDG
KRPEHRSTRTLILAPTRELVNQIAASLKEYTRKTQLKIGLVVGGASINKQQMQMERGVDI
LVATPGRLLDLIARRALTLGHVSYLVLDEADQMLDLGFVHDLRKISKMVPAKRQTLLFSA
TMPKAIADLAADFLSNPARVEVSPPGKAADKVEQFVHFVSGQNHKTELLKESMNANPDGR
AMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKSFKDGETRVLVATDVAAR
GIDIPGVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEIRLLRDIERLMSID
IQVASGEAPADRARPARGGGGGNRSGAGGNRGGGQGQGRGAGSGAPRSDGRPARRPRPDG
DFRSETRGDRPAVARENNRNADFRGQRTAERAPREIDNDLASTSDFRPAKAPQRARPAGD
NGAPRSRPPHGRPAHKAGEARGRPDGNNGQARKPAGGRPGPRREQA
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgaacagattgtgacgtctctgacccaacagggatattcgacccctaccccgatc
caggcggaagccattccgctcgttctgcagggccgcgacctcgtcggcctcgcccagacc
ggcaccggcaagacggccgctttcggcctgcctatcattgaaatgctgatgaaggacggc
aagcgtcccgaacaccgcagcacccgcacgctgatcctcgcgccgacccgcgaactggtg
aaccagatcgctgccagcctgaaggaatacacccgcaagacgcagctgaagatcggcctc
gtcgttggcggcgcttcgatcaacaagcagcagatgcagatggaacgcggcgtcgacatc
ctcgtcgcaacgcctgggcgtctgctcgacctgattgcccgtcgcgccctgacgctcggc
catgtgtcctacctcgtcctcgacgaagccgaccagatgctcgacctcggcttcgtgcat
gacctgcgcaagatctcgaagatggtgcctgccaagcgccagacgctgctgttctcggcc
accatgccgaaggccatcgccgatctcgccgccgacttcctgagcaacccggcccgtgtc
gaagtttcgcctcccggcaaggctgcggacaaggtcgaacagttcgttcacttcgtttcc
ggccagaaccacaagaccgagctcctcaaggaatcgatgaacgccaacccggacggccgc
gccatggtcttcctgcgtaccaagcacggcgccgagaagctgatgaagcatctcgagcac
gtcggcttcgcggcggcctcgatccacggcaacaagagccagggccagcgcgagcgtgct
ttgaagtctttcaaggacggtgaaacccgcgttctcgtcgccactgacgtcgctgcccgt
ggcatcgacatccccggcgtcagccacgtctacaactacgacctgccggaagtaccggat
gcctacgttcaccgcatcggccgtacggcccgtgccggtcgcgacggcatcgccatcgcc
ttctgcgctccggacgaaatccgtcttctgcgcgacatcgaacgcctgatgtccatcgac
atccaggttgccagcggcgaagcgcctgcggaccgtgcccgtcctgcccgtggtggcggt
ggcggcaatcgctccggcgccggcggcaaccgtggtggtggccagggccagggtcgtggc
gccggatcgggcgctccccgctccgacggccgtcctgctcgtcgtccgcgtccagacggt
gatttccgcagcgaaacccgcggtgatcgcccggcagtagcgcgcgaaaacaaccgcaat
gccgatttccgtggccagcgcactgcagaacgtgccccgcgcgagattgacaacgatctg
gcctcaacctcggatttccgcccggccaaggcgccgcagcgtgctcggccagccggcgac
aacggcgcaccacgcagccgtccgccgcatggccgtccagctcacaaggctggcgaagcc
cgcggtcgtccagacggcaacaacggccaggcccgcaagccagccggcggtcgcccaggc
ccccgtcgcgaacaggcgtaa
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