Rhizobium rosettiformans: D4A92_10080
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Entry
D4A92_10080 CDS
T08393
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rros
Rhizobium rosettiformans
Pathway
rros03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D4A92_10080 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rros03400
]
D4A92_10080 (ligD)
Enzymes [BR:
rros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D4A92_10080 (ligD)
DNA repair and recombination proteins [BR:
rros03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D4A92_10080 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QRF51757
LinkDB
All DBs
Position
complement(2102596..2105178)
Genome browser
AA seq
860 aa
AA seq
DB search
MSLSEYRRKRDFKATPEPKAAKATSKGNSFVIQKHAARRLHYDLRLEMDGVLKSWAVTRG
PSLVPGDKRLAVHVEDHPLAYGDFEGVIPPGQYGSGEVIVWDRGTWEPIHDMRKGYKKGH
LEFTLKGEKLGGHWHLVRMARKEDETRENWLLIKGEDEAARQPDDPDIIEEKPLSVKSGR
SIESLKGDGKAAVWNSRKTGAKKAKRPAERGGSSSPNAASIKGGKTGSLPDFLAPALATL
VKTVPKGSRWLHEIKLDGYRSQARIDHGRVQLLTRTGLDWTERFGERIASALKGLPVQTA
LLDGEIVVESGNGSSDFSLLQQDLSDGRDDRFTYYIFDIMHLDGQDLTGASLRDRKALLE
PLISEAGVPLKYSSHFDESGDLVLKHACRLSLEGVISKVADAPYRSGRGREWVKSKCTAR
QELVIGGYVPSSVSDKAIGSLIMGVNEADGLRHVGRVGTGYSRTVARQVFTRLQPLLRDK
SPFKDKLTGAERKDAVFVEPELVAEIEFRGWTGDAHLRHASFRGLREDKAARDVIQEAPT
AATSTKKAGTGKSGAAADKKMKGEAEAARRDITLTHPDRLYWPEAGVTKEGLADYYALVW
PLIAPFIVDRPLALLRCPEGHEKTCFFQKHGWRGMRKEIITIRDPQDDGGHVGIHDIEGL
LSLMQGAALEIHPWGSRAGDLERPDMVNIDLDPGPDVTWERVIDAAFEVRQRFADMGLTG
FVKTSGGKGLHVVAPLKPKAKWPEVKAAMKALADSMSADSPTDYVSTVSKAKRKGKILID
YLRNGRGATAVAPYSTRARPGAPVSMPLWFEELSPDILPNHFTVENVPTRLASLDADPWA
DFRKAEAPLAFTAGRNKKTR
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctctccgaatatcgccgcaaacgcgacttcaaggccacgccggagccgaaggcc
gcaaaggccacgagcaagggcaatagcttcgtcatccagaaacatgcggcgagacgcctg
cattacgacctgcgtctggagatggacggcgtgctgaaaagctgggccgtcacgcgcggt
ccgagcctggtgccgggcgacaagcggctggcggtgcatgtggaggatcatcccctcgcc
tacggcgatttcgaaggcgtcattccgcccggacaatacggatccggtgaggtgatcgta
tgggaccgcggcacctgggaaccgatccatgacatgcgcaagggctataagaaaggccac
ctcgaattcacgctgaagggcgagaagcttgggggacactggcatctggtgcgcatggca
cgcaaggaagacgaaacacgcgagaactggctgttgatcaagggagaagacgaggccgca
cggcagcctgatgatcccgacatcatcgaggaaaagccgctatcggtgaaaagcggccga
tcgatcgaaagcctgaaaggcgacggcaaggctgccgtctggaactcgcggaagactgga
gcgaagaaagccaaacggcctgccgaacgcggaggttcgtcctcgccaaatgcagcctcg
atcaagggtggcaagacgggcagcttgccggacttcctggcgccggcgctcgccaccctc
gttaagacagtgccgaaaggaagccggtggctgcacgagatcaagctggacggctaccgg
agccaggcacggatcgatcatggccgggtgcagctcttgacgcggacgggtctggactgg
acggagcgcttcggcgagcggattgcatctgccctcaaggggctgcctgttcagacggcg
ctgctcgacggtgagatcgtggtcgaaagcggcaatggcagcagcgatttctccctgctt
cagcaggatctgagcgacggtcgcgatgaccgtttcacctactatatcttcgacatcatg
catcttgacgggcaggacctgaccggcgcctcactcagggaccgtaaggcactgctggag
ccattgatcagcgaggcaggcgtaccgctcaagtattccagtcatttcgacgagagcggc
gatctcgttctcaaacacgcctgccgcctcagcctcgaaggggtgatctccaaggtcgcc
gatgcgccgtaccgatcgggtcgcgggcgggagtgggtcaagtcgaaatgtacggcccgc
caagaactggtcatcgggggctatgtgccgtcttccgtatccgacaaggccatcggctct
ctgatcatgggcgtcaacgaggcggacggactgcggcatgtcgggcgtgtcggtaccgga
tatagccgaacggtggcccgacaggtgttcaccaggctccagccgctgttgcgcgacaag
agcccgttcaaagacaagctgacgggtgccgaacgcaaagacgcggttttcgtcgagccg
gaactcgtcgccgagatcgagtttcgtggatggacaggggatgcccatctgcgccatgca
tccttccgtgggctgcgcgaagacaaggccgcaagggacgtgattcaggaggcgccgacg
gcggccacatcgacgaagaaggccggaaccggcaagagcggcgcagcagcggacaagaag
atgaagggcgaagcggaggcggcacgtcgtgacataacgctgacgcatcccgaccgcctc
tactggccggaggctggcgtcacgaaggaagggcttgcggattactacgccctcgtctgg
cccctgatcgcgccgttcatcgtcgacagaccacttgcgctgttgcggtgcccggaaggg
cacgaaaagacgtgtttctttcagaaacatgggtggcgcggcatgcgcaaggagatcatc
accatccgcgacccacaagacgacgggggtcacgtcggcatccacgatattgaggggctt
ctctccctgatgcagggggctgcgctcgaaatccacccctggggctcacgggccggcgat
ctcgagcgtccggatatggtgaatatcgatctcgatcccggtcccgatgtcacctgggaa
cgggtgattgacgcggccttcgaggtccggcagcggtttgcggacatgggccttacaggt
ttcgtcaagacttcggggggcaaaggcctgcatgtggtggcgccactcaagccgaaggcg
aaatggcctgaagtcaaggctgccatgaaggcactggcggacagcatgagcgctgacagt
ccgaccgactatgtctcgacggtcagcaaggcgaaacgcaagggcaagatcctgatcgac
tatctgcgcaacggccggggtgcgacggcggttgcgccctattccacgcgcgcccggccc
ggggcgcccgtgtcgatgccgctctggttcgaggagctcagccccgacatactgcccaac
catttcacggtcgaaaacgtgccgacacggctggcgagcctcgatgccgatccatgggcc
gacttccgcaaggcggaagcgccgctggcattcaccgccgggagaaacaagaagacccgc
tag
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