Rhizobium rosettiformans: D4A92_21175
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Entry
D4A92_21175 CDS
T08393
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rros
Rhizobium rosettiformans
Pathway
rros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D4A92_21175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rros03019
]
D4A92_21175
Enzymes [BR:
rros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D4A92_21175
Messenger RNA biogenesis [BR:
rros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D4A92_21175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
UTP25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QRF53783
LinkDB
All DBs
Position
4302875..4304284
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AA seq
469 aa
AA seq
DB search
MTLTTFDDLGLSKNIVATLTTLGFTTPTPIQEKGIPVVLGGRDLIGLAQTGTGKTAAFGL
PMIEMLLKDEKRPDNRTTRALILAPTRELVNQIGDNLRSYLRRLPLKINQVVGGASIGKQ
QLQLEKGTDILVATPGRLLDLIARNAISLRAVRYLVLDEADQMLDLGFIHDLRKISKMVP
PKRQTLLFSATMPPSIADLAASFLTDPLKVAVSPPGKAADKVEQHVHFVAGQNAKTEMLK
KILNDNPDGRSIVFLRTKHGAEKLMKHLDATGYSVASIHGNKSQGQRERALKGFRDGEIK
TLIATDVAARGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEGRLL
RDVEKLMGIDIPVASGEPPANLARPARPQRRAGGGGGGNNRNHQGGPGRGKSEGGAKADG
RPAKSGHRKGGNGGGQNRNANGGQGRPGNGSGQGRPARSGTAGGRRREA
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgactttgacaactttcgatgatcttggcctctccaagaatatcgtcgcgacgctgacg
acgcttggcttcacgacccccactccgatccaggagaagggtatccccgtcgttctcggc
ggtcgtgacctgatcggtctcgcacagaccggcaccggcaagacagccgctttcggcctg
ccgatgatcgagatgctcctcaaggatgagaagcgtcccgacaaccgcaccacccgtgcc
ctcattctcgctccgacccgcgaactggtaaaccagatcggcgacaacctgcgcagctac
ctgcgccgcctgccgctgaagatcaaccaggtcgtcggtggcgcctccatcggcaagcag
cagctgcagctcgaaaagggcaccgacatcctcgtggccacgcctggccgcctgcttgac
ctgatcgcccgcaacgcgatctcgctgcgcgccgtgcgttacctcgttctcgacgaagcc
gaccagatgctggacctgggcttcatccatgacctgcgcaagatctcgaagatggtcccg
ccgaagcgccagaccctgctcttctcggcgaccatgccaccgtcgatcgccgatctcgct
gcaagcttcctgaccgacccgctcaaggtcgccgtgtcccctccgggcaaggccgccgac
aaggtcgagcagcacgtgcatttcgtcgccggccagaacgccaagacggaaatgctcaag
aagatcctcaacgacaatccggatggccgctccatcgtcttcctgcgcaccaagcacggc
gcggaaaagctgatgaagcacctcgacgccaccggttactcggtcgcttctatccacggc
aacaagagccagggtcagcgcgagcgggcactgaagggtttccgtgacggcgagatcaag
acgctgatcgccaccgacgttgccgcccgcggcatcgacatcccggccgtctcccacgtc
ttcaactacgatctgccggaagtgccggatgcctatgttcaccgcatcggccgtacggcc
cgtgctggccgtgacggcatcgcgattgcattctgcggtcccgacgaaggtcgcctgctg
cgcgacgtcgaaaagctgatgggcatcgacattccggtcgcgtccggcgaaccgccggca
aaccttgcacgcccggctcgtccgcagcgtcgcgctggcggcggtggcggcggcaacaac
cgcaaccatcagggtggccccggtcgcggcaagtcggaaggcggcgccaaggctgatggt
cgtccggccaagtccggtcaccgcaagggtggcaatggcggcggacagaaccgcaacgcc
aatggcggccagggtcgtccgggcaatggcagcggccagggccgtccggcccgctccggc
actgccggcggacgccgtcgcgaagcctga
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