Rhodospirillum rubrum ATCC 11170: Rru_A3203
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Entry
Rru_A3203 CDS
T00310
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rru
Rhodospirillum rubrum ATCC 11170
Pathway
rru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rru_A3203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rru03019
]
Rru_A3203
03016 Transfer RNA biogenesis [BR:
rru03016
]
Rru_A3203
Enzymes [BR:
rru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rru_A3203
Messenger RNA biogenesis [BR:
rru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rru_A3203
Transfer RNA biogenesis [BR:
rru03016
]
Prokaryotic type
tRNA degradation factors
Rru_A3203
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
FaeA
Motif
Other DBs
NCBI-ProteinID:
ABC23998
UniProt:
Q2RPE7
LinkDB
All DBs
Position
3692386..3694914
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AA seq
842 aa
AA seq
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MPSLAPLWHDGADPGNGIRARRVFPQDSLWLSRPNRRFPDPKDSPLTPKAPKHVPFPSRE
QVLEFIRAANGEVDRREIARAFHITGPERADLRTLLKELESEGALQRGRGRRIAPPGSLP
EVAVLIVARADAEGDLFCKPEHWPEDEEPPRILLWPEPHHARRPGVGAEIGVGDRILARL
TRIGDARYDARTIRRLAAAPSRLLGVLALARDGLRLRPTNRRDRDEYLVAPEDAGGAEPG
ELVEAELLPSRRLGLRRAKVIERLGGREGPRSISLVVVHSHDIPVDFPPEALAEAEAAVG
VDLRGREDLRAVPLVTIDGEDARDFDDAVFAEPDDDPANPGGWRALVAIADVAHYVRIGA
ALDKAARERGNSVYFPDRVVPMLPEALSNGWCSLRPNEDRGCLAVWMIFDAEGNKLRHRF
LRGLMRSAARLTYTQVQAARDGHADDLTAPLQERVIAPLYGVFQALLGARSRRGTLELDL
PERKVVLDDGGEVARIEPRLRFDSHKLIEELMIAANVSAAETLEEKRRPCMYRVHDQPAP
DKLVALGEFLESLDIPFHKGSINRSGQFNGVLKAARGTPHEHMVNEVVLRSQAQAEYSPD
NIGHFGLALRRYAHFTSPIRRYADLLVHRALIAGLGLGDDGLRPGAEEDFVETAAHITAT
ERRAAQAERDAVNRYTVSFLAAKVGATFAGRINGVTRAGLFVTLEDTGADGLIPIGSLPN
DYYVHDDAHHCLRGQRDGLEFHLGAPVEVLLREANPVSGGLVFGLLQGGVAGAAKGRGFS
GKTKGRDGLGKTRLKERGAAAKLKKGARGKPKAAGRDALAGEPVGSGPKKRPPTTTSRRK
TR
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgctggctcctctctggcatgatggcgcggaccccgggaacgggatccgcgcc
cgccgcgtttttccccaagacagcctttggctttcccggccaaaccggcgttttcccgac
cctaaggacagccctttgacccccaaggcccccaagcacgtccccttccccagccgcgag
caggtgctggagttcatccgcgccgccaacggcgaggtcgaccgacgcgagatcgccagg
gccttccacatcaccggaccagagcgcgccgatctgcgcaccctgcttaaggagttggag
agcgagggcgccctgcagcgcggccgtggccgccgcatcgccccgccgggcagcctgccc
gaggtggcggtgctgatcgtcgcccgggcggacgccgagggggatctgttctgcaagccc
gagcattggccagaggacgaggagccgccgcgcatcctgctgtggcccgagccccatcac
gcccggcgcccgggggtcggcgccgagatcggcgtgggcgaccgcatcctcgcccgcctg
acccgcatcggcgacgcgcgttatgacgcccgcacgatccgccggctggcggccgccccc
tcgcgcctgctgggcgtgctggccctggcccgcgacggcctgcgcctgcgcccgaccaac
cgccgcgaccgcgacgaatatctggtcgcccccgaggatgccggcggggccgaacccggc
gagttggtcgaggccgaactgctgccctcgcgccgccttggcctgcgtcgggccaaggtg
atcgagcggctgggcggccgcgaggggccgcgctcgatcagtctggtcgttgtccatagc
cacgacatccccgttgatttcccgcccgaggccctggccgaagccgaggccgccgtgggc
gtcgacctgcgcggccgcgaagacctgcgcgccgtgccgctggtcaccatcgacggcgag
gacgcccgcgacttcgacgacgcggtcttcgccgaacccgatgacgacccggccaatccc
ggcggctggcgggcgctggtcgccatcgccgatgtcgcccattacgttcgcatcggcgct
gccctcgacaaggcggcgcgcgagcgcggcaattcggtttatttccccgaccgcgtcgtg
ccgatgctgcccgaggcgctgtcgaacggctggtgttccttgcgccccaatgaggatcgc
ggctgcctcgcggtgtggatgatcttcgacgccgagggcaacaagctgcgccaccgcttc
ctgcgcggcctgatgcgctcggccgcccgcctgacctatacccaggttcaggccgcccgc
gacggccatgccgacgatctgaccgcgcccttgcaagagcgtgtcatcgccccgctctac
ggcgttttccaagcgcttctgggcgcgcgcagccggcgcggcacgctggaactcgacctg
cccgaacgcaaggtggtgcttgatgacggcggcgaggtggcgcgcatcgagccgcgcctg
cgctttgacagccacaagctgatcgaagaactgatgatcgcggccaatgtcagcgccgcc
gagaccctggaggaaaagcgccgcccctgcatgtaccgcgtccacgaccagccggcgccc
gataagctggtggctttgggcgaatttctcgagtcgctcgatattccctttcataaggga
tcaatcaatcggtcgggccaattcaatggcgtgctgaaagccgcccgcggcacgccccac
gagcatatggtcaatgaggtggttctgcgctcgcaagcccaggccgaatacagccccgat
aacatcggtcattttggcctcgccctgcgccgctacgcccatttcacctcgccgatccgc
cgctatgccgacctgttggtccaccgcgcgctgatcgccggcctgggcctgggcgacgac
ggcctgcgaccgggcgccgaagaggatttcgtcgagaccgccgcccatatcaccgccacc
gagcgccgcgccgcccaggccgaacgcgacgccgtcaaccgctatacggtcagtttcctg
gccgccaaggtcggggcgaccttcgccggccgaatcaatggcgtcacccgcgccgggttg
ttcgtcaccctggaggacaccggcgccgacgggctgatcccgatcggcagcctgcccaac
gactactatgtccatgatgatgcccatcattgtctgcgcggccagcgcgacggcctggaa
ttccacctgggggcgccggtcgaggttctgctgcgcgaggccaatccggtcagcggcggg
ctggtcttcggcttgcttcaaggcggggtcgccggcgccgccaaggggcggggcttctct
ggaaaaaccaaaggtcgcgacggccttggcaagacccgcttgaaggagcgcggcgcggcg
gcgaagctcaagaaaggggcgcgcggcaagcccaaggcggccgggcgcgacgccttggcc
ggcgagccggtcgggagcggccccaagaaacgcccgcccaccacgacctcccgtcgtaaa
acccgttga
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