Rathayibacter rathayi: C1O28_05300
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Entry
C1O28_05300 CDS
T05845
Name
(GenBank) type IV secretion protein Rhs
Organism
rry
Rathayibacter rathayi
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
Motif
Other DBs
NCBI-ProteinID:
AZZ48679
LinkDB
All DBs
Position
complement(1081917..1087367)
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AA seq
1816 aa
AA seq
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MADLGAIEENVVFSHATAEQLTGAVRSAAASIEGQSGSRAALVTAASAEFRGWFAELFAE
NARVASADASELVGRLREVGDAVQQLAREALAEQKRRLVAREWKRQQDARNLLEHLHDGL
FGEEEPPVGPPATPPCVSVDPPPISGRQNPLPGGGGGAGGGTTSARPEDLRSFADSSRTA
NEELRGALASVRGWLAEFTASCRWGALAADAVATGFEQWLSANDQDATWAGTIAEAFAAA
GGEGSVIALPDAALAVALTSAGVSLVRQDLIIAPPQAFGAPPTTGYADDPVNTATGNFLE
TEVDLGFAGGNAALRFARTYNSLDDRGGAFGRGWSSEAEVRLRLADDGATLVRADGRETV
FPRRDDGWDRADGENLWLDRVGELLVVSDNAGSRWEFSAAGVWRASSTGAGTRVSGERDA
EGRLSALQHERGRRIDVVWAEERIAALCASDGRRVDFEYESGLLVSATGPAGTRRYGWSE
AGLLESVTDTAGVAEVRNRYDSRRRVVAQTSPFGRTTRFAYLPGRITVASDEDGTRANSW
VADARGRLVGVLDPAGRRQSMSFDGHGNLVSATERDGATTVHAYDARGHRLRSKTPSGAD
VTVGWDEHDRVMTVVAESGAVTHYDYADDADRNPSLVVDPEGGRTALEWTDGLLTEIVDP
VGVRLRFGYDRFGDLIATTDADGGTARLERDEAGRVVAAVTPSGAVTRFRYDPAGRLLST
RDALGATWRYEYDTGGRRIAVVDPLGARTTVEHGEHGAPVTTVDPLGRAVSRVLDDVGHV
SETILPDGSSWHFGHDALSRLTETVDPSGGVWRREHNATGALTATIDPTGVRRGLHHEPQ
SLRIDDGGAQQLSRFDALGRVVRVEEQDETVALASYDLCGRPVELVDGEGSVTVLRRDAA
GRVVERVSPTGAVTVFEYDDCGRPSAVVDPFGARTEIGYDRDSRRVRTVLPTGEVERIEY
DAVGRVVRRSLPGLGTARFSYDALGRVVRVSDPWTGRRRFRYDAAGQLIEAVDGLGGVTR
FEYDERGRNTVITDPMGGVIRRRFDASDRAVEVIDPLGRSTTAGYDAAGRQIWQRDRDGS
RWERHYDSDGREKSFMIDGRVVSETLRDIRGRALRITDHTAPEGPVEHELRWNRRGQLIE
RRRGGRGVSWEYDADGSRSAVVHPDGRRTEYERDARGLVTAVAHPGLGHATFGYDRSGRL
VRSSAGALAQEWVFRDGALVEHRHYGGGRPATTVLERDEDGRLSAVSGPDGSIAYRYDDA
HQLIAAIPESGDAREWSYDAAGRLVRERVGGMVHSRHYDAGGQLTAAESSDGSRVEYVHD
GLGRRLREVSSDGTERSYAWSAMGSLASVSHAQAGSAPRTTAVWVDVLGDLASVDGTDVW
WDDASGAPDLLAVGDSPVLRTPGGVTGIGDHWNDPGWRPERSTTAHDPWNPTAATPIADG
VGLTPAGALTFAGLEWMGHRAYDPTTRGFLSTDPLPPTWGAAWSGNPYSFAGNDPVHALD
PTGLSPITDAQLQAYRDGNNGALAATGDWFAHNWEYIAGAGMIIAGGLLMYTGIGGPIGL
GLIGAGADTIIQKATTGSVNWAQTALTAVAGGVGGGIAAARLGALGIEGAQAAIAISAAS
GASGGGAGSAYTYATSPGPHTTGDFIGATAAGAFTGAALGAAGGTIGGGLSSATSKLGTR
LPTSAASFDITAPPLPRIIADTFVGSRYTSSQLTEPTILFRAGSFEKGPFGQYWTETPPF
SVLQSRIDRALPPVWSTGESADLDAGFAVRFPAGTTIHSGEIANQGGIYMGGTTQHVIIK
PWFIDGVEVLGYWGLK
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
gtggcagatctgggcgcgatcgaggagaacgtcgtcttcagtcatgcgacggcagaacag
ctgaccggcgcggtccgctccgccgctgcctcgatcgagggccagtcggggtcgcgggcc
gccctcgtcacggcggcgagcgccgagttccgcggctggttcgccgagctgttcgcagag
aacgcgcgagtggcgtcggcggatgcgagcgagctcgtcggccgcctgcgcgaggtgggg
gacgcggtgcagcagctcgcacgcgaggcgctcgccgagcagaagcggcgcctcgtcgcg
cgagagtggaagcgccagcaggacgcgcggaacctgctcgagcatctgcacgacggcctg
ttcggcgaggaggagccgcccgtgggtccgccggcgacacccccgtgcgtcagtgtcgat
ccaccaccgatcagcggccggcagaatcccctccccggcggcggcggcggagcgggcgga
ggcaccacctcggcccgtccggaggacctccgctcgttcgccgattcgtcgaggaccgcg
aacgaggagctgcggggcgcgctcgcgtccgtccgcggctggctcgccgagttcaccgcc
tcctgccgatggggtgccctcgcggccgacgcggtggcgaccggcttcgagcagtggctg
agcgcgaacgaccaggacgcgacctgggccggcacgatcgccgaggccttcgcagcggcc
ggcggtgagggaagcgtcatcgcgcttccggacgcggcgctcgcggtcgccctcacctcg
gccggcgtgtcactcgtgcgtcaagacctcatcatcgctccgccgcaagcgttcggcgct
ccgccgacgaccggttacgccgacgatcccgtcaatacggccacgggtaacttcctcgag
accgaggtcgatctcggcttcgccggcggcaacgctgcgttgcgcttcgcccgcacctac
aactccttggacgaccggggcggcgcattcgggcgcggctggtcctctgaggccgaggtg
cgcctgcggctggcggacgacggcgcgaccctcgtgcgtgccgacggtcgggagacggtg
ttcccacggcgggacgacggctgggatcgggccgacggcgagaacctctggctcgatcgg
gtcggtgagctcctcgtcgtctccgacaacgccgggagccgctgggagttctcggcggcc
ggggtctggcgcgcctcgagcaccggggcgggaacgcgggtgagcggcgaacgcgacgcc
gagggccgcctcagcgccctgcagcacgagcggggtcgacgcatcgacgtggtctgggcc
gaggagcgcatcgccgctctttgcgcgtcggacgggaggcgggtcgacttcgagtacgag
agcgggctcctggtctccgcgaccggcccggccgggacccgccggtacggctggagcgag
gccggcctgctcgagagcgtgaccgacacggccggcgtcgctgaggtccgcaaccgctac
gactcccgtcgccgggtcgtcgcccagacctcgccgttcggccgcaccacccgattcgcg
taccttcccgggcggatcaccgtcgcctccgacgaggacggcacgcgggcgaacagctgg
gtcgccgacgctcgtggacgcctggtcggagtactcgacccggcgggtcggcggcagtcg
atgagcttcgacgggcacgggaacctcgtctccgcgaccgagcgcgacggggcgacgacg
gtccacgcctacgatgcgcgcggtcaccgcctccgctcgaagaccccctccggcgcggac
gtcaccgtcggctgggacgagcacgaccgcgtgatgacggtcgtcgcggagtccggcgcc
gtgacgcactacgactacgcggacgacgccgaccggaacccgagcctcgtcgttgatccc
gagggcggacgaacggcactggagtggaccgacggactgctcaccgagatcgtcgatccc
gtcggcgtgcgcctccgcttcggctacgaccggttcggcgacctgatcgccaccacggac
gccgacggcgggaccgcccggctggagcgggacgaggcgggccgggtcgtcgccgcggtc
accccctccggagccgtgacccgcttccgctacgacccggcgggtcggctcctctcgacg
cgcgacgccctcggcgcgacctggcgctacgagtacgacaccggcgggcgccgcatcgcc
gtcgtcgacccgctcggcgctcgcaccaccgtcgagcacggcgagcacggcgcacccgtc
accaccgtcgatcctctgggacgagcggtgtcccgcgtcctcgacgacgtcggccacgtc
agtgagacgatcctgccggacggctcctcctggcatttcggccacgacgccctctcccga
ctgaccgagacggtcgaccccagcggaggcgtgtggcgccgcgagcacaacgcgaccggc
gccctgacagccaccatcgaccccaccggcgtccggcgcggcctccaccacgaaccgcag
tcgctccggatcgacgacggcggcgcgcagcagctcagccgcttcgatgcgctcggccgc
gtcgtccgcgtcgaggagcaggacgagaccgtcgcgctcgcctcctacgacctctgcgga
cgaccggtcgaactggtcgacggcgaaggctccgtcacggttctgcgccgggacgcggcc
gggagagtcgtcgagcgcgtctcccccaccggtgccgtgactgtcttcgagtacgacgac
tgcggtcgaccgtccgccgtcgtcgatccgttcggcgcccgcaccgagatcggatacgac
cgcgactcgcgccgcgtgcggaccgtgctgcccacgggcgaggtcgagcgcatcgagtac
gacgccgtcggccgcgtcgtccggcgctcgctccccggcctcgggacggcccggttcagc
tacgacgccctcgggcgggtggtccgcgtcagcgacccgtggacaggcaggcgacggttc
cgctacgacgcggcgggtcagctgatcgaggcagtcgacgggctcggcggggtgacccgc
ttcgaatacgacgagcgcggccgcaacaccgtcatcaccgacccgatggggggcgtgatc
cgtcggcgcttcgatgcctccgatcgggcagtcgaggtgatagatccgcttggccgctcg
acaaccgccggctatgacgccgcgggccgtcagatctggcagcgggatcgggacgggtcg
cgctgggagcggcactacgactccgatggccgcgagaagagcttcatgatcgacggccgc
gtcgtctccgagacgctccgcgacatccgtggccgcgccctccgcatcaccgaccacacc
gcccccgaggggccggtcgagcacgagctgagatggaaccggcgcggccagctcatcgag
cgccgccgcggtggccgcggagtctcgtgggagtacgacgccgacggctcgcgcagcgcc
gtcgtgcatcccgacggtcgccgcaccgaatacgagcgcgacgcccgcgggctggtcacc
gccgtcgcgcatccgggcctgggccatgcgaccttcggctacgaccgctccggccgcctg
gtgcgctcttccgcgggcgccctcgctcaggagtgggtcttccgcgacggcgcgctcgtc
gagcaccgccactacggcggcggtcgccccgccaccacggttctggaacgcgacgaggac
ggacgtctcagcgcagtgagcggaccggatggctccatcgcttaccgatacgacgacgcg
caccagctgatcgcagcgatacccgaatcgggggacgcccgcgagtggagctacgacgcg
gccggacgcctcgtccgagagcgggtgggcgggatggtgcactcccgacactacgacgcg
ggcggccaactgaccgcggcggagtcgagcgacggctcccgggtggagtacgtgcacgac
gggctcggtcgtcgcctccgcgaggtctcctccgacggtacggagcgcagctacgcgtgg
tctgcgatgggcagcctggcgtcggtctcgcacgcgcaggcgggctccgcgccgcgcacc
accgcagtctgggtggacgtgctcggcgacctcgcttccgtcgacggcaccgacgtgtgg
tgggacgacgcgagcggcgcccccgacctgctcgccgtcggcgactcgcccgtcctgcgc
accccgggcggcgtcaccggcatcggcgaccactggaacgacccaggctggcgccccgaa
cgctccaccaccgcccacgacccgtggaaccccaccgccgccacccccatcgccgacggc
gtcggcctcacccccgccggcgccctcaccttcgccggactcgaatggatggggcaccgc
gcctacgaccccaccacccgcggattcctctccaccgaccccctaccacccacctggggc
gcggcctggtccgggaacccatactccttcgccggcaacgaccccgtccacgcactcgac
cccacaggtctaagccccatcaccgacgcgcaattgcaggcctaccgcgacggaaacaac
ggggccctcgccgcaaccggcgactggttcgcccacaactgggaatacatcgccggcgcc
gggatgatcatcgcgggcggcctcctgatgtacacgggaatcggcggccccatcggcctg
ggcctgatcggcgccggagccgacaccatcatccaaaaagccaccaccggctccgtcaac
tgggcgcaaaccgcactcaccgccgtagcgggcggagtcggcggcggcatcgccgccgcc
cgcctcggcgccctcggcattgaaggagcccaagccgccatcgccatcagcgccgcatcc
ggcgcctccggcggcggagcaggaagcgcctacacctacgccaccagccccggaccccac
accaccggggacttcatcggagccaccgcagccggcgccttcaccggcgccgccctcggc
gccgcaggcggaaccatcggcggaggactctccagcgcaacatccaagctcggcacccgc
ttgcccactagtgcggcgtcattcgacatcaccgcacccccattgccccggattatcgcc
gataccttcgtcggctcccgctacacctcatcgcaattaaccgagccaactatacttttc
cgcgccggatcatttgaaaagggaccatttgggcagtattggaccgaaactccgcctttc
agcgtgcttcaatctcgaatcgatcgagccctgccgcccgtctggtcgacaggggaatcg
gcagacctagatgccggatttgccgtccgttttcctgctgggactacaatccactcaggc
gaaatagctaatcaaggaggaatctacatgggaggcacgacgcagcacgtcatcataaaa
ccttggttcatagatggcgtagaagttctcggctattggggactcaaatga
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