Rhodococcus ruber: CS378_25105
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Entry
CS378_25105 CDS
T05142
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz00300
Lysine biosynthesis
rrz00470
D-Amino acid metabolism
rrz01100
Metabolic pathways
rrz01110
Biosynthesis of secondary metabolites
rrz01120
Microbial metabolism in diverse environments
rrz01230
Biosynthesis of amino acids
Module
rrz_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
CS378_25105 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
CS378_25105 (lysA)
Enzymes [BR:
rrz01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
CS378_25105 (lysA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ATQ31697
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All DBs
Position
5493712..5495133
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AA seq
473 aa
AA seq
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MNAHPAGPRHAEIPHAPGLTERPANAAELNLLHPNVWPRNTRRGDDGVMTIAGVPVTELA
ERYGTPLFVVDEDDFRSRCREIAAAFGPGAKVHYASKAFLCTEIARWVDQEGLSLDVSTG
GELAVALRSGFPAGKIAMHGNNKSVAELRTAVAAGVGHIVLDSMSEIDLLDAVAGELDVV
QDVLIRVTVGVEAHTHEFISTAHEDQKFGLSLAGGVAMAAVRKVFASDHLRLVGLHSHIG
SQIFDVDGFELAAHRVIGLLRDVVDEFGVDKTAQMNIVDLGGGLGISYVPSDDPPPVEEL
AAKLRHIVQTESTLAGLPEPTLAVEPGRAIAGPGTVTLYEVGTIKDVAVGAHQVRRYISV
DGGMSDNIRTSLYQAEYEARLVSRAGDGEPVVSRVVGKHCESGDIVIRDAWMPADLEAGD
LLAVAATGAYCYSMSSRYNLLPRPAVVAVKDGAARVVLRRETVEDLLSLEVTE
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgcgcaccccgccggtccccggcacgccgagatcccgcacgcaccgggcctgacc
gagcggcctgcgaacgccgccgaactgaacctgctgcacccgaacgtgtggccccgcaac
acccggcgcggcgacgacggtgtcatgacgatcgccggtgtgcccgtgaccgagctcgcc
gagcggtacggcaccccgctcttcgtcgtcgacgaggacgacttccgctcccggtgccgg
gagatcgcggccgcgttcggaccgggcgcgaaggtccactacgcgtcgaaggcgttcctg
tgcaccgagatcgcgcgctgggtcgaccaggagggcctgtcgctcgacgtctcgaccggc
ggtgagctcgccgtcgcgctgcgctccggcttcccggccggaaagatcgccatgcacggc
aacaacaagtccgtggccgagctgcggaccgcggtcgccgcgggcgtcgggcacatcgtg
ctggactccatgtcggagatcgacctgctcgacgcggtcgccggcgaactcgacgtggtg
caggacgtgctgatccgcgtcaccgtcggcgtcgaggcgcacacccacgagttcatctcc
accgcgcacgaggaccagaagttcggcctgtccctggccggcggagtggccatggccgcc
gtccgcaaggtgttcgcgagcgatcacctgcgcctggtcggcctgcacagccacatcggc
tcgcagatcttcgacgtcgacggattcgaactcgcggcgcaccgggtcatcggcctgctg
cgcgacgtcgtcgacgaattcggcgtcgacaagaccgcgcagatgaacatcgtggacctc
ggcggcggcctcggcatctcctacgtgcccagcgacgacccgccgcccgtggaggaactc
gccgccaagctgcggcacatcgtgcagaccgagtccaccctcgccggcctgcccgagccg
accctcgccgtcgagcccggacgcgccatcgccggccccggcaccgtgaccctctacgag
gtgggcaccatcaaggacgtcgcggtgggcgcgcaccaggtgcgccgctacatcagcgtc
gacggcggcatgagcgacaacatccgcacctcgctgtaccaggccgagtacgaggcccgc
ctggtgtcgcgggccggcgacggggagccggtcgtgtcccgcgtcgtcggcaagcactgt
gagagcggcgacatcgtcatccgcgatgcctggatgcccgccgacctcgaagccggcgac
ctgttggccgtcgccgcgaccggtgcatactgctactcgatgtccagcaggtacaacctg
ctgccccgtcccgccgtcgtggcggtcaaggacggcgccgctcgcgtcgtcctgcgtcgg
gaaaccgtggaagatctgctcagcttggaggttacggagtga
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