KEGG   Raphanus sativus (radish): 108860282
Entry
108860282         CDS       T06014                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108860282
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsz03021]
    108860282
Enzymes [BR:rsz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     108860282
Transcription machinery [BR:rsz03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     108860282
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 CFAP77
Other DBs
NCBI-GeneID: 108860282
NCBI-ProteinID: XP_018489679
UniProt: A0A6J0NYC8
LinkDB
Position
5:7439089..7444935
AA seq 1171 aa
MTDTDMEEIEAAMEVDLRDIGEPFLQSFCKKAATSFFDEYGLVSHQLNSYNFFVEHGLQS
VFESSGEMLVEPSFDPTKNKDHEWRYATVKFGEVSVDKPTLYSDDKELVFLPWHARLQNM
TYSARMKVNVDVEVFVKKVVKRDKFKTGQDEYVEKQILSKKTQDIPIGRIPVMVKSVLCN
TTEKEKGKNGESYRKGECAFDQGGYFVIKGAEKVFIAQEQICTKRLWISNSPWTVSYRSE
TKRNRFIVRLSENQKAEDFKRREKVLTVYFLSTEIPVWLLFFALGVASDKEAVDLIAFDG
GDASITNSVIASIQEADLVCEDFRHGRNALAYVENQIKSTKFPPGESVDDCLSLFLFPGL
KSLKQKARFLGYMVRCLFSAYAGKRKCENRDNFRNKRIELAGELLERELRVHLAHARRTM
TKAMQRHLTGDGDLKPIEHYLDASIITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRAN
PLQTLIDLRRTRQQVLYTGRVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLSLLGVVST
QIMEPVVEKLFDSGMEELVDDTSTPLCGKHKVLLNGDWVGVCSDSDYFVAELKSRRRHSE
LPRQMEIKQDKDDKEVRIFTDAGRLLRPLMVVENLHKLKQSKPSQYTFEHLLDQGILELI
GIEEEEDCTTAWGTKQLLKEQKSYTHCELDLSFLLGVSCAIVPFANHDHGRRVLYQSQKH
CQQAIGFSSTNPNIRCDTLTQQLFYPQKPLFKTMASECLQKDVLFNGQNAIVAVNVHLGF
NQEDSIVMNKASLERGMFRSEQIRSYKADVDSKDSEKRKKMDEVVQFGKTHSKIGRVDSL
DDDGFPFVGANMHSGDIVIGRCTESGTDHSVKLKHTERGIVQKVVLSSNDDGKNYAAVSL
RQVRSPCLGDKFSSMHGQKGVLGYIEEQENFAFTTQGIVPDIVINPHAFPSRQTPGQLLE
AALSKGIACPMQKKKGKTDAYSKVKRHATPFSTPSVDDITDQLHRAGFSRWGNERVYNGR
TGEMMRSLIFMGPNFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD
CLIAHGASANLHERLFTLSDSSQMHICRNCKSAANVIERVASSGKRIRGPYCRLCESPDY
VVMVNVPYGAKLLYQELFSMGISLSFETNLC
NT seq 3516 nt   +upstreamnt  +downstreamnt
atgactgatacggacatggaagagatcgaggccgctatggaggtcgatctacgcgacata
ggagagccgtttctccagagcttctgcaagaaagcggcgacttctttcttcgacgagtac
ggcctcgtcagccaccagctcaactcgtacaacttcttcgtcgagcacgggctccagagc
gtgttcgaatcgtccggggagatgctcgtggagccgtcgttcgatccgacgaagaacaag
gaccatgagtggagatacgcgacggtgaagttcggggaagtcagcgtggataagcctacc
ttgtactctgatgataaggagcttgtgtttcttccctggcatgctaggcttcagaacatg
acctactcggccaggatgaaagttaatgtcgatgttgaggtgttcgttaagaaagttgtt
aagagagacaagttcaagacgggacaagacgagtatgttgagaagcagatcctgtctaag
aagacgcaggacatcccgattgggaggatacccgtgatggtgaagtctgtgctttgcaac
acaacggagaaagagaaagggaagaacggggaaagctacagaaagggggagtgtgcgttt
gaccagggcggatactttgtgattaaaggagctgagaaggtctttattgctcaagaacag
atatgcacaaagagactctggatttctaattcaccatggacagtctcctacaggtccgag
actaagaggaaccggttcattgtgcgtctatcagagaatcagaaagctgaagacttcaag
agaagggagaaagtactgacagtgtacttcctgtcaaccgagatcccggtctggctcctg
ttcttcgctctgggtgttgcgtcagacaaagaggctgtcgatctgattgccttcgatggc
ggggatgcaagcatcaccaacagcgtcattgcttcgatccaggaagctgatctggtttgc
gaagattttcgccatgggaggaatgctctggcatatgtcgagaaccagattaagagtaca
aaattcccacctggagaaagtgtggatgactgcctaagtctgttcttgtttccaggcctc
aaaagcttgaagcagaaagcacgattcctgggctacatggtgagatgcctgtttagcgca
tatgctgggaaaagaaagtgtgagaacagagacaactttaggaacaagaggatcgaacta
gctggagagttgctggaaagggagttaagggtgcatctggcacacgctagaagaacaatg
accaaggccatgcagagacacctcacgggggatggcgatttgaagcctattgagcattat
ttggatgcttccatcataacgaatggactcagtagagccttctccactggagcgtggtct
catcccttcaggaagatggaaagggtgtcaggtgttgttgctaatctaggccgtgcaaat
cccctgcagactttgattgatctgaggagaacgcggcaacaggtcctgtataccggtaga
gttggagatgctagatacccgcatccctctcactggggcagagtatgctttttgtcaacc
ccagatggtgaaaattgtggtcttgtgaagaacctgtctctccttggagttgttagcact
caaattatggagcccgtggtggaaaagctcttcgatagtggaatggaagagctggtggac
gataccagtacaccactgtgcgggaaacacaaagttcttctgaatggagactgggttgga
gtatgttcggattcggactacttcgttgcggagttaaaaagcaggcggcgtcatagtgaa
ttacctcgtcagatggaaatcaagcaagacaaagatgacaaggaggtacggatttttact
gacgctggcagacttctccgtcccctcatggttgtggaaaatctccacaagttgaagcag
agtaaaccatcgcagtacacctttgagcatcttcttgatcaagggattctcgagctgatc
gggattgaggaagaagaagactgtaccaccgcatggggaaccaaacagcttctgaaagag
cagaagagttacactcattgcgaactggacctgtcgttcctgttgggtgtcagctgtgcc
attgttccgttcgctaatcacgatcatggtagaagagttctctaccagtcccagaagcat
tgccaacaagccattggcttctcctcaacgaacccaaacatccgctgtgataccctgacc
cagcagctgttctacccccagaaaccacttttcaagacaatggcgtccgagtgtcttcag
aaggatgtgttgtttaatggacagaacgcaattgttgctgtgaatgttcatctcgggttc
aaccaggaggactccattgtgatgaacaaggcttcgctggaacgtggtatgttccgttca
gaacagatcaggagctataaagctgatgtagacagtaaagactcggagaagaggaaaaag
atggacgaggttgttcagtttggaaagacacacagcaaaattggcagagttgacagcttg
gatgatgacgggttcccttttgttggtgctaatatgcacagtggtgatattgtcattggc
agatgcaccgagtctgggactgatcacagcgtgaaactgaagcacactgagagagggata
gtgcagaaagtggttctatcgtccaatgacgatgggaaaaattatgctgctgtttctcta
agacaggttcgttctccatgtcttggagataaattctccagtatgcatggtcagaagggt
gtcttaggctatatagaggagcaggagaattttgctttcacgacgcaaggcatagttcct
gatatcgtgataaacccgcacgcattcccttctcggcaaacaccgggccaactcttggag
gctgctctctccaaaggaatagcttgtcctatgcaaaagaagaagggcaagactgatgca
tactccaaagtcaaacgccatgcaactccgttctccactcccagtgtcgatgacataacc
gaccagcttcacagggctggcttttcaagatggggaaacgaaagggtgtacaatggaaga
acaggagagatgatgcgttcactcatcttcatgggcccaaatttctaccagcgactcatc
cacatgtcggaggacaaagtcaagttcaggaacaccggaccagttcaccctctgacgcgc
cagccggttgcagacaggaagaggttcggtggaatcaagttcggagagatggagcgagac
tgtctgattgctcacggtgcatcagcgaacttgcacgagcgtctgttcactctgagtgac
tcttcacagatgcacatctgcaggaactgtaaaagcgcagccaatgtgatcgagagggtg
gcaagcagtggaaaaaggatcagaggaccatattgcaggctgtgcgagtctccggactat
gtggtgatggtgaacgtgccgtatggagctaagcttctgtatcaggagctgttcagtatg
ggcatctctctctccttcgaaaccaacctctgctga

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